PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY64853.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 557aa MW: 61158.1 Da PI: 8.3815

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY64853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.4	1.6e-41	172	247	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCe+hska++v+v+++eqrfCqqCsrfh l+efD++krsCr+rLa+hnerrrk+q GAY64853.1 172 CQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFDDGKRSCRKRLAGHNERRRKPQ 247 **************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MEPWSYGSEG KGAVANDRIS PADSSSRSKG YLMGWELNTS CHNMLVSHRE APGNQSFGEF 60 GFQEVVGKRL TKDYPIKDVL SSKNHFMNPN MPTPNTSFGE DESTSKRSSS VVDSNSTLDS 120 SLIDLNLGRF VDQRDSHTSK FSHGTPKFSS SKSSAAPKRV RLSGISSHTA YCQVYGCNKD 180 LSSSKDYHKR HKVCEAHSKA AKVIVNEIEQ RFCQQCSRFH FLDEFDDGKR SCRKRLAGHN 240 ERRRKPQVGV HPGRTAKLLR SHEAFAGCKF QGTTLPMSSF ICPDILPGGI FYPEKCRTND 300 WCKCVKVEDM NDYNAVSATS ISKGNLHPKS FFPQYDFQKV VPPFHGNEVN AATESIFSAT 360 SARYPQDLGG PKSVSSPLFR DISLGSEEFS IFDTPSTIQG LSRVSESGYA HPLLSSKSQN 420 SPSPLSGIPV ARPLVIGGSG GAHYNISQVS EKLIGVSSQA STSQASNKFS LSGNNSFEGS 480 NLGSILMSDS SDAANFDVSN RFYRGSDFMS SKDRLSCEDG ATIDLLQLSS QLQRVEHQNQ 540 FMQVKDENGS FCCLRIT

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MEPWSYGSEG KGAVANDRIS PADSSSRSKG YLMGWELNTS CHNMLVSHRE APGNQSFGEF  60
GFQEVVGKRL TKDYPIKDVL SSKNHFMNPN MPTPNTSFGE DESTSKRSSS VVDSNSTLDS  120
SLIDLNLGRF VDQRDSHTSK FSHGTPKFSS SKSSAAPKRV RLSGISSHTA YCQVYGCNKD  180
LSSSKDYHKR HKVCEAHSKA AKVIVNEIEQ RFCQQCSRFH FLDEFDDGKR SCRKRLAGHN  240
ERRRKPQVGV HPGRTAKLLR SHEAFAGCKF QGTTLPMSSF ICPDILPGGI FYPEKCRTND  300
WCKCVKVEDM NDYNAVSATS ISKGNLHPKS FFPQYDFQKV VPPFHGNEVN AATESIFSAT  360
SARYPQDLGG PKSVSSPLFR DISLGSEEFS IFDTPSTIQG LSRVSESGYA HPLLSSKSQN  420
SPSPLSGIPV ARPLVIGGSG GAHYNISQVS EKLIGVSSQA STSQASNKFS LSGNNSFEGS  480
NLGSILMSDS SDAANFDVSN RFYRGSDFMS SKDRLSCEDG ATIDLLQLSS QLQRVEHQNQ  540
FMQVKDENGS FCCLRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-52	SBP family protein