PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY64777.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 519aa MW: 58176.6 Da PI: 6.7995

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY64777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.9	1.8e-13	342	387	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+r+N++f Lr+++P+ K++Ka+ L Av YIk+L GAY64777.1 342 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVAYIKEL 387 799*********************6.....5**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MEEIVSSSSS SYPMPFCQET SPTLQQRLQF IVQNRPEWWV YSIFWQPLKD VNGRLVLSWG 60 DGYFRGSKDF ATRAAAGKQG AGNEPKFGFF LERKKVSKEV QVHFGEDMDL DRMVDGDVTD 120 GEWYYTVSVT RSFAIGDGSA LGRVFSSGDY VWLTGDHELQ LYECERVKEA RMHGIQTLVC 180 VSTACGVVEL GSSDLIKEDW SLVQLAKSLF GPVIATMLTK QVNLNSESQL QLPNPTTRNN 240 NNTNNVAPLL DIGMFSGAGA PHHHHHHHQK EWSLEENSKQ QTREVSGDVI KKEQLAAGFG 300 RSSSDSGPSD SDGHFVSGFT DINVTSKKRG RKPTSGRESP LNHVEAERQR RERLNHRFYA 360 LRSVVPNVSK MDKASLLADA VAYIKELRAK VDELEAKLRE QARKSKVVYN VYDNNQSTGS 420 TIMMPTSSST THHLGININI MDVDVKIVGS EAMIRVQCPD INYPAAKLMD VLRDLEFHVH 480 HASVSSVRET MLQDVVVRIP EGLISEEVIR SAIFQRMQN

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MEEIVSSSSS SYPMPFCQET SPTLQQRLQF IVQNRPEWWV YSIFWQPLKD VNGRLVLSWG  60
DGYFRGSKDF ATRAAAGKQG AGNEPKFGFF LERKKVSKEV QVHFGEDMDL DRMVDGDVTD  120
GEWYYTVSVT RSFAIGDGSA LGRVFSSGDY VWLTGDHELQ LYECERVKEA RMHGIQTLVC  180
VSTACGVVEL GSSDLIKEDW SLVQLAKSLF GPVIATMLTK QVNLNSESQL QLPNPTTRNN  240
NNTNNVAPLL DIGMFSGAGA PHHHHHHHQK EWSLEENSKQ QTREVSGDVI KKEQLAAGFG  300
RSSSDSGPSD SDGHFVSGFT DINVTSKKRG RKPTSGRESP LNHVEAERQR RERLNHRFYA  360
LRSVVPNVSK MDKASLLADA VAYIKELRAK VDELEAKLRE QARKSKVVYN VYDNNQSTGS  420
TIMMPTSSST THHLGININI MDVDVKIVGS EAMIRVQCPD INYPAAKLMD VLRDLEFHVH  480
HASVSSVRET MLQDVVVRIP EGLISEEVIR SAIFQRMQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	348	353	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	3e-59	bHLH family protein