PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY64389.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28879.8 Da PI: 9.7542 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.1 | 7.1e-11 | 2 | 33 | 18 | 49 |
HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyey 49 +gi KKA EL +L++ e+av++fs++gk y++ GAY64389.1 2 AGIYKKATELVTLTGSEIAVVVFSQSGKPYTF 33 69*****************************9 PP | |||||||
2 | SRF-TF | 46 | 6.6e-15 | 88 | 127 | 10 | 49 |
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +tfskRr gi K A+EL +L++ e+a+++fs++gk y++ GAY64389.1 88 IITFSKRRSGIYKNASELVTLTGSEIAIVVFSQSGKPYTF 127 68*************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MAGIYKKATE LVTLTGSEIA VVVFSQSGKP YTFGHRQVSI NELNQQHNEL RRQLDEEKEQ 60 EKMLTQMRRG KETQPPKKTK GRQKIEMIIT FSKRRSGIYK NASELVTLTG SEIAIVVFSQ 120 SGKPYTFGHP SVEAVANRFL GMNQLPNDNI HSLVVGHRQV RINELNQQHN ELRRQLDEEK 180 EQEKILTQMR RGKETQPRMW ETPVDEHNLQ EQLQMDSAVD DLHQIFLAKL NERAAAAAAS 240 SPVAPSLYFH HK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-29 | M-type_MADS family protein |