PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY63670.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 342aa MW: 38943.2 Da PI: 8.7135

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY63670.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.1e-05	179	198	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ GAY63670.1 179 FACSICSKTFNRYNNMQMHM 198 78*****************9 PP
2	zf-C2H2	16	3.3e-05	263	285	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ GAY63670.1 263 FMCRKCGKTFAVKGDWRTHEKNC 285 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MGLRSYHVED NNLCSFQSPT FIEWLKPSSS SSSSSSSSSY SSYVTQQAQL TNPMMTILKF 60 PPVYQQQKQQ QQPENLDEGV RCLPLLSRFK EKKALKEEEE DMQVQETNLG VKQEKIEKVT 120 VALHIGLPNT GDSDAESKDF DTKQEEMISR KSFHGCSLNK DSRFWIPTPA QILVGPMQFA 180 CSICSKTFNR YNNMQMHMWG HGSEYRKGPD SLKGTQPAAM LRLPCYCCAQ GCKNNINHPR 240 AKPLKDFRTL QTHFKRKHGA KPFMCRKCGK TFAVKGDWRT HEKNCGKLWY CTCGSDFKHK 300 RSLKDHIRSF GKGHSPHPSL DGFEDEKECV TTGSEDEVAR SC

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MGLRSYHVED NNLCSFQSPT FIEWLKPSSS SSSSSSSSSY SSYVTQQAQL TNPMMTILKF  60
PPVYQQQKQQ QQPENLDEGV RCLPLLSRFK EKKALKEEEE DMQVQETNLG VKQEKIEKVT  120
VALHIGLPNT GDSDAESKDF DTKQEEMISR KSFHGCSLNK DSRFWIPTPA QILVGPMQFA  180
CSICSKTFNR YNNMQMHMWG HGSEYRKGPD SLKGTQPAAM LRLPCYCCAQ GCKNNINHPR  240
AKPLKDFRTL QTHFKRKHGA KPFMCRKCGK TFAVKGDWRT HEKNCGKLWY CTCGSDFKHK  300
RSLKDHIRSF GKGHSPHPSL DGFEDEKECV TTGSEDEVAR SC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-122	C2H2 family protein