PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY63140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 313aa MW: 35912.4 Da PI: 5.8249 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87 | 1.1e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng+ KKA+ELSvLCd++va+i+fs++g++ +s GAY63140.1 9 KRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFS 58 79*******************************************98776 PP | |||||||
2 | K-box | 26.3 | 3.2e-10 | 103 | 179 | 2 | 77 |
K-box 2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 q++s+ +++++ e+ qqe+ k k++i+n+++ +R + + e +l e+++ eq Le+ lk++R +K++ll e+ GAY63140.1 103 QATSNPTtNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKQHLLEENC 179 5555555699************************77777666666679************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence |
MGRVKVQIKR IENTTNRQVT FSKRRNGLVK KAYELSVLCD VDVALIMFSP SGRVSLFSGN 60 KSMEEILARY VNLPEHERGR LRNQEFLQRA LGKLRSEANQ TYQATSNPTT NTDSHLEEVQ 120 QEIVKCKSQI QNMEKRLRIF EEDPSEMTTL YEIKHREQIL EETLKQVRIR KQHLLEENCN 180 SSSTPATSQI HLPPAETSDH MNGFVTESPN NILEWLPHRD SQVHNLNILD SNGLLPLRDE 240 PQEATEILVP PLNMFRGHNM NIDGQISRRD GLEDDNNDMQ RPQFGQAIAP LPPVKQEDGI 300 SLTCLHIESE DTQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77950.2 | 2e-55 | MIKC_MADS family protein |