PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY62165.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GATA

Protein Properties

Length: 542aa MW: 60261.9 Da PI: 6.3514

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY62165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.3e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ GAY62165.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH 60 RVSKVKSISI NKNKDVKVLK RKSNYDNVVV GGFAPDYNHG YRKVVDEDTS NRSSSGSAIS 120 NSESCVQFGS ADASDLTGPA QSNVWDSVVP SKKRTCVNRP KQSPVEKLTK DLYTILHEQQ 180 SSYFSGSSEE DLLFESETPM VSVEIGHGSV LIRHPSSIAR EEESEASSLS VENKQYLVNE 240 SYSRSATLHV YNDYQGVNFS SRNMDKAKNF IEQGMQQDQL KRDKSQQEKL QILGSHTSPL 300 CEIDLNDILN FNEFVGHLTH EEQQQLLKYL PLNDTTVFPD SLNSMFDSLQ FKENISSFQQ 360 LLAEGVFDLS FLGVATEDCR TLKRLALSNL TTSNWVEHYQ SLKKCKSGTG GSYVSRGPDA 420 AASNNIINAK RLRDGQNQKF PEAKNIMKSP KRVTVKATYE NKEFMENDGS CFSPRSLFAL 480 PSDGSSLMLE SLHFVDESSD QDLLLDVPSN GSFPQAELLH PSLSFGQQAS SSSSAYPNHA 540 RP

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RVSKVKSISI NKNKDVKVLK RKSNYDNVVV GGFAPDYNHG YRKVVDEDTS NRSSSGSAIS  120
NSESCVQFGS ADASDLTGPA QSNVWDSVVP SKKRTCVNRP KQSPVEKLTK DLYTILHEQQ  180
SSYFSGSSEE DLLFESETPM VSVEIGHGSV LIRHPSSIAR EEESEASSLS VENKQYLVNE  240
SYSRSATLHV YNDYQGVNFS SRNMDKAKNF IEQGMQQDQL KRDKSQQEKL QILGSHTSPL  300
CEIDLNDILN FNEFVGHLTH EEQQQLLKYL PLNDTTVFPD SLNSMFDSLQ FKENISSFQQ  360
LLAEGVFDLS FLGVATEDCR TLKRLALSNL TTSNWVEHYQ SLKKCKSGTG GSYVSRGPDA  420
AASNNIINAK RLRDGQNQKF PEAKNIMKSP KRVTVKATYE NKEFMENDGS CFSPRSLFAL  480
PSDGSSLMLE SLHFVDESSD QDLLLDVPSN GSFPQAELLH PSLSFGQQAS SSSSAYPNHA  540
RP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-158	GATA family protein