PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY61787.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 365aa    MW: 39913.3 Da    PI: 9.8118
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY61787.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.5e-32177233158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RRq Rak+e e+kl +k rkpylheSRh hA+rR+Rg+gGrF
  GAY61787.1 177 EEPVYVNAKQYHGILRRRQLRAKAELERKL-IKVRKPYLHESRHLHAMRRARGCGGRF 233
                 69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MLQSMHQNKS SNSSGPEANS NNSFTISSQP WWRGVGHDST SRAMLRGGIG NISSPREPIN  60
GVLVAKTSKS QVNSGMDGGA DATKEMLMSV ASQADGKFGG QQPSQHSVSL MHPQFSEYLT  120
QPSQLELVGH SIACASYPYS DSYYGGAVPA YGQQALVHPQ SIGVHSARMA LPLEMAEEPV  180
YVNAKQYHGI LRRRQLRAKA ELERKLIKVR KPYLHESRHL HAMRRARGCG GRFVNTKKLD  240
SQTSNGTVTN GTSSNVAVST LPPNSSSSES VATNYSRGTA DSSTGCREVT EPQVHKMQQQ  300
QRCSNGNGQT YYEGNGNGCY SHHQGFQLFK YHSLPDNKVE EGDFSRQQSG RIVENRAQHR  360
ALTIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.23e-51NF-YA family protein