PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY61579.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 522aa MW: 59677.8 Da PI: 5.0601

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY61579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	224	245	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 + C Cgk F++ + ++H ++ GAY61579.1 224 FYCVLCGKKFKSEKQWTNHEQS 245 78*****************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MASEKRCLYE VLGLRKECTT DEIRSAYKKL ALQRHPDKLV QSGLSQAEAT AQFQELVHAY 60 EVLSDPKERA WYDSHRSQIL FSDLNSASNC GPFPNLYSYF SNTAFSGYSD SGPNRKSRRV 120 MEEENKKLRK KAKREYNETV RELAAFVKKR DKRVMDMMVK KNEEIERKRE EEKERKKRLE 180 KERMERAKRY EEPAWARIDD EGDNEVGNEE GLEEEEIEKK RSEFYCVLCG KKFKSEKQWT 240 NHEQSKKHKE KVADLRESFV DEDEVMADFG ELDGEVEELG ERFKDNVGVE EREIGSGVGG 300 LSGDEDVESE FFDVADGVEV NEVDDRFGKE DEDEDEDADD EMNMLKAMLS GHKNRKRVAV 360 RKEDEVLKTE AHVENEIGES EFMEYDNCKS TRRKNKKDRG KKSGGEAANG EAAKGDRDGF 420 KSTNEEANGH HNSGVIEESS SHSCVGNKNN GISDNHSEKD PKIPDQPVDG KGTKKDRKAK 480 LKNSSKGNKT KAASKNSSNV CEKCGQEFET RYILLIDGNI DV

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MASEKRCLYE VLGLRKECTT DEIRSAYKKL ALQRHPDKLV QSGLSQAEAT AQFQELVHAY  60
EVLSDPKERA WYDSHRSQIL FSDLNSASNC GPFPNLYSYF SNTAFSGYSD SGPNRKSRRV  120
MEEENKKLRK KAKREYNETV RELAAFVKKR DKRVMDMMVK KNEEIERKRE EEKERKKRLE  180
KERMERAKRY EEPAWARIDD EGDNEVGNEE GLEEEEIEKK RSEFYCVLCG KKFKSEKQWT  240
NHEQSKKHKE KVADLRESFV DEDEVMADFG ELDGEVEELG ERFKDNVGVE EREIGSGVGG  300
LSGDEDVESE FFDVADGVEV NEVDDRFGKE DEDEDEDADD EMNMLKAMLS GHKNRKRVAV  360
RKEDEVLKTE AHVENEIGES EFMEYDNCKS TRRKNKKDRG KKSGGEAANG EAAKGDRDGF  420
KSTNEEANGH HNSGVIEESS SHSCVGNKNN GISDNHSEKD PKIPDQPVDG KGTKKDRKAK  480
LKNSSKGNKT KAASKNSSNV CEKCGQEFET RYILLIDGNI DV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	152	RKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDK
2	126	134	KKLRKKAKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	6e-46	C2H2 family protein