PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY61578.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 594aa MW: 68053.5 Da PI: 5.0432

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY61578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	299	320	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 + C Cgk F++ + ++H ++ GAY61578.1 299 FYCVLCGKKFKSEKQWTNHEQS 320 78*****************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence
MASEKRCLYE VLGLRKECTT DEIRSAYKKL ALQRHPDKLV QSGLSQAEAT AQFQELVHAY 60 EVLSDPKERA WYDSHRSQIL FSDLNSASNC GPFPNLYSYF SNTAFSGYSD SGKGFYKVYS 120 DLFNKIYLVE VSYVKKLGLG LDVLREAPIM GNLESPYGQV TAFYNYWLGF STVMDFCWVD 180 EYDVMAGPNR KSRRVMEEEN KKLRKKAKRE YNETVRELAA FVKKRDKRVM DMMVKKNEEI 240 ERKREEEKER KKRLEKERME RAKRYEEPAW ARIDDEGDNE VGNEEGLEEE EIEKKRSEFY 300 CVLCGKKFKS EKQWTNHEQS KKHKEKVADL RESFVDEDEV MADFGELDGE VEELGERFKD 360 NVGVEEREIG SGVGGLSGDE DVESEFFDVA DGVEVNEVDD RFGKEDEDED EDADDEMNML 420 KAMLSGHKNR KRVAVRKEDE VLKTEAHVEN EIGESEFMEY DNCKSTRRKN KKDRGKKSGG 480 EAANGEAAKG DRDGFKSTNE EANGHHNSGV IEESSSHSCV GNKNNGISDN HSEKDPKIPD 540 QPVDGKGTKK DRKAKLKNSS KGNKTKAASK NSSNVCEKCG QEFETRSMAT LTWY

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence

MASEKRCLYE VLGLRKECTT DEIRSAYKKL ALQRHPDKLV QSGLSQAEAT AQFQELVHAY  60
EVLSDPKERA WYDSHRSQIL FSDLNSASNC GPFPNLYSYF SNTAFSGYSD SGKGFYKVYS  120
DLFNKIYLVE VSYVKKLGLG LDVLREAPIM GNLESPYGQV TAFYNYWLGF STVMDFCWVD  180
EYDVMAGPNR KSRRVMEEEN KKLRKKAKRE YNETVRELAA FVKKRDKRVM DMMVKKNEEI  240
ERKREEEKER KKRLEKERME RAKRYEEPAW ARIDDEGDNE VGNEEGLEEE EIEKKRSEFY  300
CVLCGKKFKS EKQWTNHEQS KKHKEKVADL RESFVDEDEV MADFGELDGE VEELGERFKD  360
NVGVEEREIG SGVGGLSGDE DVESEFFDVA DGVEVNEVDD RFGKEDEDED EDADDEMNML  420
KAMLSGHKNR KRVAVRKEDE VLKTEAHVEN EIGESEFMEY DNCKSTRRKN KKDRGKKSGG  480
EAANGEAAKG DRDGFKSTNE EANGHHNSGV IEESSSHSCV GNKNNGISDN HSEKDPKIPD  540
QPVDGKGTKK DRKAKLKNSS KGNKTKAASK NSSNVCEKCG QEFETRSMAT LTWY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	227	RKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDK
2	201	209	KKLRKKAKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-158	C2H2 family protein