PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY60858.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 1033aa MW: 116461 Da PI: 5.6725

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY60858.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	389	433	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT eE++ l+ +++ G +W Ia+ +g++Rt+ qc r+q GAY60858.1 389 NPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQR 433 69*****************************************96 PP
2	Myb_DNA-binding	48.2	2.4e-15	441	487	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r WT+eEde+l av+ +G +W ++a+t+ gRt+ qc +rw+k l GAY60858.1 441 RREWTKEEDEQLRIAVEAYGESNWQSVASTLK-GRTGTQCSNRWNKTL 487 678**************************9.**********975 PP
3	Myb_DNA-binding	50.8	4e-16	495	538	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grW ++Ed++l+ a ++G+++Wk+Ia+ ++ gRt qc++rw + GAY60858.1 495 GRWNPDEDQRLIVATMLFGPRNWKKIAQFVP-GRTQVQCRERWVN 538 8****************************.*********87 PP
4	Myb_DNA-binding	43.1	9.9e-14	546	588	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r WT++Ed++l a+k++G W+++a+ ++ Rt++qc rw GAY60858.1 546 RSEWTEQEDLRLEAAIKEHGYC-WSKVASALP-SRTDNQCWRRWK 588 789***************99.*****.*********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1033 aa Download sequence
MSHRNDYDDG EEFSGSENDD AFDEDMEALR RACMIIRTDA DDLEKTDYHH LPDAAAPSAT 60 AADEWSSDGE GDLELVRSIQ NRLALSNDLC QPLSLEALCT LPPVVSDDDE EDDFETLHVI 120 QKRFSAYDSA DNNKSSVEVH ESASVVASGE DKNSNNLFEN RIDSCEEARN DETLTNLPQP 180 CASSTEWHQS DECNRLSVLS QKQSSNFPKS AQVFIDAIKK NRKVTGRALS QKKDLRVQLI 240 SSSCNSRKSK DSEGTNKKLS ALNYGPAENS QVANYKMAMS KSPLSLHRKK WSKKENENLR 300 KGIRQQFQEM MLQLSVDRFS VPEGSATDTN SLDSILASIK DLEVTPEMIR DFLPKVNWDQ 360 VASMYVQGRS GAECEARWLN FEDPLINHNP WTVEEEKSLL LIIQEKGITD WFDIAASLGT 420 NRTPFQCLAR YQRSLNACIL RREWTKEEDE QLRIAVEAYG ESNWQSVAST LKGRTGTQCS 480 NRWNKTLHPS RERQGRWNPD EDQRLIVATM LFGPRNWKKI AQFVPGRTQV QCRERWVNSL 540 DPSVKRSEWT EQEDLRLEAA IKEHGYCWSK VASALPSRTD NQCWRRWKAL HPEAVPLFLE 600 AKKIQKTALV SNFVDRERER PALRPNDFIP IPMLESAFQP EEPNASKKRK RKSSNTHKKI 660 KPNRCRKEAE VCSEEVLGIT NSDVMDISDQ QDATQKKKKV KPRSTKKKAG CGSVATEKSS 720 KKGSKSRPSA ELDESSQSIL LQPPKKENQR NTNDDDNNFS LEDTDKARRQ GHGIKRCNEP 780 SGECQGLACS SCQQDASKTS KPRSKSHFKN RLQASDGDNI PLACFLHNKP KKKKLEVPKI 840 ADQPCSSNGE ETMGSLLPFE TVDQQSNEQP ILSQMQNGEV HTCHNAGTPE DMSLCKMRSS 900 HLKDMQIMVV SDECIGEDKV EGGVTDKVEG ATTSPSEPVS EAMPDINLED EIEACDFTLA 960 SWLNRSSLST QSSLNNMQNV LASDMELERG DEVKGATITP HEPVREPMSN NHKDDIDDAD 1020 IPLAFLRRKL KKK

Sequence ? help Back to Top

Protein Sequence Length: 1033 aa Download sequence

MSHRNDYDDG EEFSGSENDD AFDEDMEALR RACMIIRTDA DDLEKTDYHH LPDAAAPSAT  60
AADEWSSDGE GDLELVRSIQ NRLALSNDLC QPLSLEALCT LPPVVSDDDE EDDFETLHVI  120
QKRFSAYDSA DNNKSSVEVH ESASVVASGE DKNSNNLFEN RIDSCEEARN DETLTNLPQP  180
CASSTEWHQS DECNRLSVLS QKQSSNFPKS AQVFIDAIKK NRKVTGRALS QKKDLRVQLI  240
SSSCNSRKSK DSEGTNKKLS ALNYGPAENS QVANYKMAMS KSPLSLHRKK WSKKENENLR  300
KGIRQQFQEM MLQLSVDRFS VPEGSATDTN SLDSILASIK DLEVTPEMIR DFLPKVNWDQ  360
VASMYVQGRS GAECEARWLN FEDPLINHNP WTVEEEKSLL LIIQEKGITD WFDIAASLGT  420
NRTPFQCLAR YQRSLNACIL RREWTKEEDE QLRIAVEAYG ESNWQSVAST LKGRTGTQCS  480
NRWNKTLHPS RERQGRWNPD EDQRLIVATM LFGPRNWKKI AQFVPGRTQV QCRERWVNSL  540
DPSVKRSEWT EQEDLRLEAA IKEHGYCWSK VASALPSRTD NQCWRRWKAL HPEAVPLFLE  600
AKKIQKTALV SNFVDRERER PALRPNDFIP IPMLESAFQP EEPNASKKRK RKSSNTHKKI  660
KPNRCRKEAE VCSEEVLGIT NSDVMDISDQ QDATQKKKKV KPRSTKKKAG CGSVATEKSS  720
KKGSKSRPSA ELDESSQSIL LQPPKKENQR NTNDDDNNFS LEDTDKARRQ GHGIKRCNEP  780
SGECQGLACS SCQQDASKTS KPRSKSHFKN RLQASDGDNI PLACFLHNKP KKKKLEVPKI  840
ADQPCSSNGE ETMGSLLPFE TVDQQSNEQP ILSQMQNGEV HTCHNAGTPE DMSLCKMRSS  900
HLKDMQIMVV SDECIGEDKV EGGVTDKVEG ATTSPSEPVS EAMPDINLED EIEACDFTLA  960
SWLNRSSLST QSSLNNMQNV LASDMELERG DEVKGATITP HEPVREPMSN NHKDDIDDAD  1020
IPLAFLRRKL KKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	647	652	KKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-176	MYB family protein