PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY60549.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 479aa MW: 52381.6 Da PI: 6.612

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY60549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.4e-08	103	125	25	48
HHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 25 ktIartmgkgRtlkqcksrwqkyl 48 +tIa++++ gR +kqc++rw+++l GAY60549.1 103 STIAQHLP-GRIGKQCRERWHNHL 125 69****.***********97 PP
2	Myb_DNA-binding	42.4	1.6e-13	131	173	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+e ++ l++a++ +G++ W+ + ++ gRt++ +k++w+ GAY60549.1 131 KEAWTQEGELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 173 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MRTVLFSPPI SSKFRILKLS SESCFGMESD WVISAPSDGL GDGGQRMRSM HGRTSGPTRR 60 STKGQWTPEE RSVLKDRTDV QCLHRWQKVL SPELVKGPWS KESTIAQHLP GRIGKQCRER 120 WHNHLNPAIN KEAWTQEGEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN HWNSSVKKKL 180 DSYLASGLLE QFQGLPLVGH QNQPLPSSSQ RMQSSGDESC PKGGTEGEEV SECSRESAGV 240 AHTHSAGNAV LQTRDQVIFS EESCPGKDRS SSPASCTEQY YTSLEDVTFS IPEIPGEAGC 300 SSKFPEQSFV NNAGSFASTP YQFNLEDVSN FSALKLGHQS AGLPAHCISS HEGHEVANVP 360 FQSSLGLSVP SSAGNLAAGS AKPENMLISD DECCRVLFGE AMKDGCFSLE NLPRGLNMVD 420 SLLCRSLDVP ISESDRTSSS QAFCPSRPEL LGTSCSQSFL CRKMIGDNTC CSYMIFGNF

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MRTVLFSPPI SSKFRILKLS SESCFGMESD WVISAPSDGL GDGGQRMRSM HGRTSGPTRR  60
STKGQWTPEE RSVLKDRTDV QCLHRWQKVL SPELVKGPWS KESTIAQHLP GRIGKQCRER  120
WHNHLNPAIN KEAWTQEGEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN HWNSSVKKKL  180
DSYLASGLLE QFQGLPLVGH QNQPLPSSSQ RMQSSGDESC PKGGTEGEEV SECSRESAGV  240
AHTHSAGNAV LQTRDQVIFS EESCPGKDRS SSPASCTEQY YTSLEDVTFS IPEIPGEAGC  300
SSKFPEQSFV NNAGSFASTP YQFNLEDVSN FSALKLGHQS AGLPAHCISS HEGHEVANVP  360
FQSSLGLSVP SSAGNLAAGS AKPENMLISD DECCRVLFGE AMKDGCFSLE NLPRGLNMVD  420
SLLCRSLDVP ISESDRTSSS QAFCPSRPEL LGTSCSQSFL CRKMIGDNTC CSYMIFGNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-110	MYB family protein