PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY59080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 25169 Da PI: 4.796 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126 | 1.9e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrr+C++dC++apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar++dP+yG+v++i++lqqq+++l++e+++l+ GAY59080.1 7 SCGACKFLRRRCTNDCIFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRSDAAITISYEALARMHDPIYGCVAHIFALQQQVANLQEEIEMLE 105 6************************978*******************************************************************9988 PP DUF260 99 ee 100 ++ GAY59080.1 106 NH 107 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MTGLGSSCGA CKFLRRRCTN DCIFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN 60 RSDAAITISY EALARMHDPI YGCVAHIFAL QQQVANLQEE IEMLENHMAN NLVGAVFSGG 120 SQTPNEPCSQ SYFSPQLEAM NTLYYPNQQA ELLQNHAANI NINQAFESQT NAEIHCLQGW 180 EDQNFLTESN PNHLLGNLDA VEQENFANYP SFDINGNAIN LQGPSWQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-46 | LBD family protein |