PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY58951.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 594aa    MW: 65038.3 Da    PI: 4.8457
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY58951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.22.1e-1362285891374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAe+v++++l+la+a++++++ la +++ +m ++a++f+eALa+r+++    ly    p++  +++ se l +   f+e++P+lkf+h+taN
  GAY58951.1 228 LVHALMACAEVVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYG----LY----PQSPIDHSFSELLEM--QFYETCPYLKFAHFTAN 316
                 689****************************************************....44....444433334444444..5**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae+++v+fe++ +va++l+dl+ ++L++kp
  GAY58951.1 317 QAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKP 415
                 *************************************************************************************************** PP

        GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                    +++aVn+v++lh+ll++++++++    vL++vk+++P++++v+eqea+hn++ Fl+rf+e+l+yys++fdsle ++ + ++++++ E+  +g++i+
  GAY58951.1 416 seVDSVAVNSVFELHKLLAQPGAIDK----VLSVVKNIKPDIFTVAEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKAMTEAY-MGNQIC 509
                 55568*************99999999....************************************************97777766666665.****** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nvvacega+r+erhetl++Wr r+++aGF p++++++a+kqa++ll+ ++ +dgy+vee++g+l+lgW +rpL+++SaW+
  GAY58951.1 510 NVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAYKQASMLLALFAgGDGYKVEENNGCLTLGWYTRPLIATSAWK 589
                 *******************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    
MKREHSQLDP PPPPPPPPSC VAGPSGKGKM WEEEQTDGGM DELLAVLGYN VRSSDMVEVA  60
QKIEQLEEAM GAFQADGINH LASDTVHYDP SNLCTWLESM LTEFNPTMPA GLGLDPVPAP  120
SVFDESSFIA PAESSTITSL DFSHQRVLEE PSTSDYDLKA IPGKAMYGAN NSQNSSNNYL  180
SLSSASASSL SSSTTTRENK RLKTSEFYPP ESTRPIVLAD SQENGIRLVH ALMACAEVVQ  240
QNNLTLAEAF VKQIRFLAVS QAGAMGKVAT HFAEALARRI YGLYPQSPID HSFSELLEMQ  300
FYETCPYLKF AHFTANQAIL EAFDGKRRVH VIDFSMNQGM QWPALMQALA LRPGGPPAFR  360
LTGIGPPAAD NTDQLQQVGW KLAQLAESIH VEFEYRGFVA NSLADLDASM LEIKPSEVDS  420
VAVNSVFELH KLLAQPGAID KVLSVVKNIK PDIFTVAEQE ANHNGPVFLD RFTESLHYYS  480
TMFDSLEGSV NSPENHKAMT EAYMGNQICN VVACEGADRV ERHETLAQWR TRFSSAGFIP  540
AHIGSNAYKQ ASMLLALFAG GDGYKVEENN GCLTLGWYTR PLIATSAWKL AAKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein