PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY58715.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 318aa MW: 34228.5 Da PI: 7.9167

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY58715.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H GAY58715.1 132 YECKTCNRSFPSFQALGGHRASH 154 99**********99999998887 PP
2	zf-C2H2	13.2	0.00028	227	249	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H GAY58715.1 227 HECSICGSEFTSGQALGGHMRRH 249 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MIMGSSSNDH QNNQIVKGKR TKRQRSTSPF GFTVTDSSSS GNNSGADESY YSNNNNNNSV 60 MSFPTTSGES TEEEDQDMAN CLIMLAQGDD RSRQINQENI IDDKVQKFNA SRKFTTAVTS 120 NNKAGAGGFY VYECKTCNRS FPSFQALGGH RASHKKPKAA LAEAPEKKSS ASVPALAVMP 180 TKNEYKDSYS SLHHHDQSHM QAASAAAAAA NNNNTANNNN KGGNKIHECS ICGSEFTSGQ 240 ALGGHMRRHR AAVATGNNIN QVTTIESNIG DVKPVAATRS ILPLDLNLPA PEDDHHIRFG 300 ATQQSLVFSA PALVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	5e-56	C2H2 family protein