PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY58713.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 393aa MW: 43391.9 Da PI: 8.6662

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY58713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.3	3.3e-07	221	243	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H GAY58713.1 221 HYCQVCGKGFKRDANLRMHMRAH 243 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MIPGGATSCF PNMSQASLKA YPVPEDNIVS SSLQTSSSPG PASNPTNSSL LYSVFFLKEK 60 IHQLQSVVTV LVSQGQATES TSIAMANMGS LIQEIIITAS SLMVTCQQMS TLPAASISGN 120 NNNNNITANE IFQQQQHVGP NNQERSSGQQ GYYFTEAFDI CYGDNNDYVT THDHNRGMHN 180 NVINSNDNTN ITVAENRESF SEIDCDIIEL VAGDLLAKYT HYCQVCGKGF KRDANLRMHM 240 RAHGDEYKTT AALTNPLKKN GSSMGNNNES AIKIARKYSC PQEGCRWNKK HAKFQPLKSM 300 ICAKNHYKRS HCPKMYVCKR CNRKQFSVLS DLRTHEKHCG DLKWQCSCGT TFSRKDKLMG 360 HVALFVGHTP AVNVNSTNMY GQKRAATGTN AIT

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MIPGGATSCF PNMSQASLKA YPVPEDNIVS SSLQTSSSPG PASNPTNSSL LYSVFFLKEK  60
IHQLQSVVTV LVSQGQATES TSIAMANMGS LIQEIIITAS SLMVTCQQMS TLPAASISGN  120
NNNNNITANE IFQQQQHVGP NNQERSSGQQ GYYFTEAFDI CYGDNNDYVT THDHNRGMHN  180
NVINSNDNTN ITVAENRESF SEIDCDIIEL VAGDLLAKYT HYCQVCGKGF KRDANLRMHM  240
RAHGDEYKTT AALTNPLKKN GSSMGNNNES AIKIARKYSC PQEGCRWNKK HAKFQPLKSM  300
ICAKNHYKRS HCPKMYVCKR CNRKQFSVLS DLRTHEKHCG DLKWQCSCGT TFSRKDKLMG  360
HVALFVGHTP AVNVNSTNMY GQKRAATGTN AIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-103	C2H2 family protein