PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY58468.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 967aa MW: 107127 Da PI: 8.7378

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY58468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.8e-06	268	288	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC++fa+ G C++G+ C+F+H GAY58468.1 268 LCKDFAA-GKCRRGSHCHFSHH 288 9****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence
FSFVFAPCLV SLLLDTICKN LHQLQSQILL TASVYLSKTQ YFNKVNAWRD CQVAAVGDEG 60 SKELKIVLVL VVNLSLCFYD MSGTRRKHNS KWDLKEESQL SHEKVRDSAR PGKAGISFYE 120 RESRSGRFSP RAAGYNSGHN WSAREADDIQ SSRHDMQFSS REPLPGSRSS RKDDRIDDYR 180 ENFKATATWD ADGNYDMKMS PGLDDWRQQI RRRSPRKDWN GHRRSRSRSR SRSRSRSWNR 240 SRSPVRELRR ESGVYGRNRG RPGVSAQLCK DFAAGKCRRG SHCHFSHHSS QSYEDNWDSR 300 HKQAGAPRFS TPHESREYPI RSGRNREGSL EIVDIPCKFF AAGNCRNGKY CKFFHSSQAL 360 ASPVRRSRDD SLVRGQNSDE REKLWHGSKW TDATTISDAA RLSEDKNERM GAKKSRDDGL 420 VRNHNSDDVE KLWNGSTWNG TDISTDAAKL SENQNVGMGA PGPRFSGWST DDRLPHTLDE 480 NATHSKITAV TLGGDEINKM EASQGSIKIA GAVMGAPESG GTENWLGDME MSPEWNYPVK 540 PCSRVMNEDH GQITRSSQSL PICDTSVLHE QGIIQETSGL LCDEAATMEP MMDKSYLKRD 600 INQRDVGGVR LPGADKVAIG ETAIPHIDLN FSANVLPTQG LEQNGQSSSA LPFLNLNSIG 660 QSQGAINSES SRGGNINNPQ NHAVFQVEKS INKPGTGDGS ALQFSSAIQP TQNMVSSEQL 720 TQLTNLSASL VQILGNGQQL PQLYAALNSH NVMQVPSSVK SEGPIAPDSA VASQTSEAIR 780 SQNQNQSQYD PLSDSIDPKQ LELVSPPGFS VNPSGQKSNA DGKPNGGLEN HKVSEINGEV 840 EAEEGRKAQA ENKVPQENGE VQKTDGDDKD DKADEGKKSK DTKGLRAFKF ALAEFVKELL 900 KPTWKEGQIN KDAYKNIVKK VVDKVIGTMQ GAANIPQTQE KIDQYLSFSK SKLTKLVQAY 960 VEKSRKG

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence

FSFVFAPCLV SLLLDTICKN LHQLQSQILL TASVYLSKTQ YFNKVNAWRD CQVAAVGDEG  60
SKELKIVLVL VVNLSLCFYD MSGTRRKHNS KWDLKEESQL SHEKVRDSAR PGKAGISFYE  120
RESRSGRFSP RAAGYNSGHN WSAREADDIQ SSRHDMQFSS REPLPGSRSS RKDDRIDDYR  180
ENFKATATWD ADGNYDMKMS PGLDDWRQQI RRRSPRKDWN GHRRSRSRSR SRSRSRSWNR  240
SRSPVRELRR ESGVYGRNRG RPGVSAQLCK DFAAGKCRRG SHCHFSHHSS QSYEDNWDSR  300
HKQAGAPRFS TPHESREYPI RSGRNREGSL EIVDIPCKFF AAGNCRNGKY CKFFHSSQAL  360
ASPVRRSRDD SLVRGQNSDE REKLWHGSKW TDATTISDAA RLSEDKNERM GAKKSRDDGL  420
VRNHNSDDVE KLWNGSTWNG TDISTDAAKL SENQNVGMGA PGPRFSGWST DDRLPHTLDE  480
NATHSKITAV TLGGDEINKM EASQGSIKIA GAVMGAPESG GTENWLGDME MSPEWNYPVK  540
PCSRVMNEDH GQITRSSQSL PICDTSVLHE QGIIQETSGL LCDEAATMEP MMDKSYLKRD  600
INQRDVGGVR LPGADKVAIG ETAIPHIDLN FSANVLPTQG LEQNGQSSSA LPFLNLNSIG  660
QSQGAINSES SRGGNINNPQ NHAVFQVEKS INKPGTGDGS ALQFSSAIQP TQNMVSSEQL  720
TQLTNLSASL VQILGNGQQL PQLYAALNSH NVMQVPSSVK SEGPIAPDSA VASQTSEAIR  780
SQNQNQSQYD PLSDSIDPKQ LELVSPPGFS VNPSGQKSNA DGKPNGGLEN HKVSEINGEV  840
EAEEGRKAQA ENKVPQENGE VQKTDGDDKD DKADEGKKSK DTKGLRAFKF ALAEFVKELL  900
KPTWKEGQIN KDAYKNIVKK VVDKVIGTMQ GAANIPQTQE KIDQYLSFSK SKLTKLVQAY  960
VEKSRKG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	224	232	RSRSRSRSR
2	224	234	RSRSRSRSRSR
3	226	234	RSRSRSRSR
4	226	236	RSRSRSRSRSR
5	228	236	RSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-13	C3H family protein