PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY58072.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 368aa MW: 42269.5 Da PI: 7.0001

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY58072.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136.3	2.6e-42	125	262	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnsssgka 90 kkdrhski T++g+RdRR+Rls+++a++fFdLqd+LG+dk+skt+eWL+ qakp+ik+l + +++ sec ++++ +s++ + GAY58072.1 125 SKKDRHSKINTAKGPRDRRMRLSLDVARKFFDLQDMLGYDKASKTVEWLMIQAKPEIKKLIERclpevnccgdvGAKGTSEC----EVEAIIDNSAAIR 219 69***********************************************************4444444444433333444....2333334444455 PP TCP 91 aksaakskksqksaasalnlakesrakarararertrekmrik 133 +k + k+kk ++s + + lak+ r+karararert +km + GAY58072.1 220 RKISVKEKKIKHSRKIIRPLAKDLREKARARARERTCKKMWSR 262 66666999999999999********************9765 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MLPSNNNWNN NNLVSYTDQS IFHRPFFNES NQTSKEDEPS LSFFHFPYEL ELEDHNFFLQ 60 QQYYDLLLQH QPLTPDPDDS TLPELLVNMV DSSNSEANGL TKDCSVRNQG VISNRQMPIS 120 KRSSSKKDRH SKINTAKGPR DRRMRLSLDV ARKFFDLQDM LGYDKASKTV EWLMIQAKPE 180 IKKLIERCLP EVNCCGDVGA KGTSECEVEA IIDNSAAIRR KISVKEKKIK HSRKIIRPLA 240 KDLREKARAR ARERTCKKMW SREFDHVSKP QADEPEKNEL ISFGSKSSFG ARDTKTQDKN 300 HSLEVLADQV EEPSSQEQPV NLGNQEEIVD DALVIMGKWS PSSVSTYLQN IGIPQEHQFA 360 DFQYFGKQ

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MLPSNNNWNN NNLVSYTDQS IFHRPFFNES NQTSKEDEPS LSFFHFPYEL ELEDHNFFLQ  60
QQYYDLLLQH QPLTPDPDDS TLPELLVNMV DSSNSEANGL TKDCSVRNQG VISNRQMPIS  120
KRSSSKKDRH SKINTAKGPR DRRMRLSLDV ARKFFDLQDM LGYDKASKTV EWLMIQAKPE  180
IKKLIERCLP EVNCCGDVGA KGTSECEVEA IIDNSAAIRR KISVKEKKIK HSRKIIRPLA  240
KDLREKARAR ARERTCKKMW SREFDHVSKP QADEPEKNEL ISFGSKSSFG ARDTKTQDKN  300
HSLEVLADQV EEPSSQEQPV NLGNQEEIVD DALVIMGKWS PSSVSTYLQN IGIPQEHQFA  360
DFQYFGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-21	TCP family protein