PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57752.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 426aa MW: 46861.2 Da PI: 7.3165

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57752.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.5	1.2e-34	35	159	2	108
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec..eaesssssasn 84 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ + + ++++++s+ GAY57752.1 35 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELppwnpgtvtntrasT------AksRNAHHQQSE-- 125 79**************************************************************998887765433210......111111111111.. PP TCP 85 sssg.............kaaksaakskksqksaasal 108 + + ++ + + ++q++++s+l GAY57752.1 126 ---AneernfqypgssnDVQNLPMVETPNQNQSSSFL 159 ...1122234455555422222223333333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MGESHNHAIT SSRLGIRNTG GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH 60 TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA AIDELAELPP WNPGTVTNTR ASTAKSRNAH 120 HQQSEANEER NFQYPGSSND VQNLPMVETP NQNQSSSFLP PALDSDSIAD TIKSFFPMGA 180 STDTTASSIQ FQNYSPDLLS RTTTSHSQDL RLSLQSFQEP NSILLQHRQQ PHPHHHAHSH 240 SHQHQQQNEQ VQVLFSGTTP LGGYDTASAA ASAWSESAEM SRFQRMVAWN SGGGAADDSA 300 GNASGGGFVF NSQQPPPVQP LFGQNQLFHS QRGPLQSSNT PSVRAWIDQP IGLTNDHRQQ 360 HHHHLHHHQI LQQPAVHQSV ISGIGFASPV GEFSGFRIPA RIQGEDEEHD HGIHNRPSSA 420 SSDSRH

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MGESHNHAIT SSRLGIRNTG GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH  60
TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA AIDELAELPP WNPGTVTNTR ASTAKSRNAH  120
HQQSEANEER NFQYPGSSND VQNLPMVETP NQNQSSSFLP PALDSDSIAD TIKSFFPMGA  180
STDTTASSIQ FQNYSPDLLS RTTTSHSQDL RLSLQSFQEP NSILLQHRQQ PHPHHHAHSH  240
SHQHQQQNEQ VQVLFSGTTP LGGYDTASAA ASAWSESAEM SRFQRMVAWN SGGGAADDSA  300
GNASGGGFVF NSQQPPPVQP LFGQNQLFHS QRGPLQSSNT PSVRAWIDQP IGLTNDHRQQ  360
HHHHLHHHQI LQQPAVHQSV ISGIGFASPV GEFSGFRIPA RIQGEDEEHD HGIHNRPSSA  420
SSDSRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	1e-102	TCP family protein