PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57419.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 491aa MW: 53843 Da PI: 9.0074

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57419.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	108	128	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H GAY57419.1 108 CEICNKGFQRDQNLQLHRRGH 128 *******************88 PP
2	zf-C2H2	12.8	0.00036	182	204	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ GAY57419.1 182 WKCEKCSKKYAVQSDWKAHSKTC 204 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MSNITGDAVS FSSSGNNIKN HHHHHHGEEV HQQQEQQQGL VSQFLVTNSL ASSTTTATNN 60 SSSNGSSSTT QPPPPAKRKR NLPGNPDPTA EVIALSPNSL MATNRFLCEI CNKGFQRDQN 120 LQLHRRGHNL PWKLRQRSTT EIRKRVYVCP EPSCVHHNPA RALGDLTGIK KHFSRKHGEK 180 KWKCEKCSKK YAVQSDWKAH SKTCGTKEYK CDCGTIFSRR DSFITHRAFC DALAEESQKA 240 NQGLNPQLGH VSEHISSMPI NNHTENNNNP LAHHELMPMP PKPFNTMAAA SIFESSNNNL 300 QQSAAASASA SLSATALLQK AAQMGATASN GSMMSSPMMH KSLVTSMAPP SFVAIPKDHQ 360 SLSAAAASME EISLSSSAQF FSANIGHAEG SSAMNDVGMF YRFLDQNNAA LMKSLEHDES 420 NKSGNNQSVL NNGDVMTVDF MGIGGSRTRN HFQQQQSQEL KFGSGINNIG QPRMQSLNHF 480 QQQQQDVPFL N

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MSNITGDAVS FSSSGNNIKN HHHHHHGEEV HQQQEQQQGL VSQFLVTNSL ASSTTTATNN  60
SSSNGSSSTT QPPPPAKRKR NLPGNPDPTA EVIALSPNSL MATNRFLCEI CNKGFQRDQN  120
LQLHRRGHNL PWKLRQRSTT EIRKRVYVCP EPSCVHHNPA RALGDLTGIK KHFSRKHGEK  180
KWKCEKCSKK YAVQSDWKAH SKTCGTKEYK CDCGTIFSRR DSFITHRAFC DALAEESQKA  240
NQGLNPQLGH VSEHISSMPI NNHTENNNNP LAHHELMPMP PKPFNTMAAA SIFESSNNNL  300
QQSAAASASA SLSATALLQK AAQMGATASN GSMMSSPMMH KSLVTSMAPP SFVAIPKDHQ  360
SLSAAAASME EISLSSSAQF FSANIGHAEG SSAMNDVGMF YRFLDQNNAA LMKSLEHDES  420
NKSGNNQSVL NNGDVMTVDF MGIGGSRTRN HFQQQQSQEL KFGSGINNIG QPRMQSLNHF  480
QQQQQDVPFL N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-101	C2H2 family protein