PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57370.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 1623aa MW: 180121 Da PI: 6.345

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57370.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	1532	1555	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+Fs++ + H+r+H GAY57370.1 1532 RCPheGCGKRFSSHKYAIIHQRVH 1555 69999*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1623 aa Download sequence
MGNNSNNNVE IPKWLQGLPL APVFYPTDTE FADPIAYISR IEKEASAFGI CKIVPPLPKP 60 SKKYVFGNLN KSLSKCSELG SDVNLPDAGT VATVGCCERG NEGEARAVFT TRHQELGQSV 120 KRIKGVDNKD NLQLGAQKQV WQSGEVYTLE QFESKSKAFA RSLLSVIKEV SPLVIEALFW 180 KAASEKPVYV EYANDVPGSG FGEPEGQFRY FHRRRRKVTS WKSYRNRGKA DEKNIELESA 240 RNCHNDQITH SCDKNDLETP TSSTPSSTLP FDENSRSSRR KSVTGSNDVE GTAGWKLSNS 300 PWNLQVISRS PGSLTRFMPD DIPGVTSPMV YIGMLFSWFA WHVEDHELHS MNFLHTGAPK 360 TWYAIPGDYA FTFEEVIRNE AYGGDIDRLA KSQFPVLPAA LSLLGEKTTL ISPEVIAASG 420 IPCCRLVQNP GEFVVTFPRA YHAGFSHGFN CGEAANFGTP QWLMVAKEAA VRRAAMNYLP 480 MLSHQQLLYL LTMSFISRVP RSLLPGARSS RLRDRQKEER ELLVKKAFVE DILKENNILS 540 VLLGRQSTFN AVLWNADLLP CQSKESQMPS ANETVSTTPG ETVPNNPYEK HNDHNNLLDE 600 MNVYMEALND PYMGDDDISR DFHIDSGALA CVACGILGFP FMSVVQLSER ASIELLADLV 660 KEGPGVSELK NTHHHTNLDG SVKSSVSDDL SLVPDISLLQ KDLSVPSITK SSRIWNTSNK 720 YLRPRIFCLE HAAQIEEILQ SKGGAEILVI CHSDYQKIKA HAAAVAEEIG SPFNYIDVPL 780 DAASEEDLHL IDLAIDDGEL DECREDWTSK LGINLRHCVK VRKNSPSMRV QHALSLGDLF 840 SEKSLSSDFS KIKWQFRRSR SKIKLYGRAH SKPCQNIEIK KDEVTGRKLD GATVKKEEKL 900 IQYSRRKFKQ KPDLSTGACG DQVHPRELLP EVSAATCDHL DGHNRSDFEI NPDGTGNSGS 960 ISAGSIHSPI GMSEGLHDIP VREATSNLSL NYSPSRVADS LATATLVVDS IVQNDTESMK 1020 ELNIEGDIFH MATCKSAEMQ QNSGTDVTSE ETEISHHTVA SNEGSIIMRS DQITESMTIK 1080 NEKCNLASEG HCRKVADKDV LMIEVSGLAN SASFRVASSP LRSLDAQIEN LAPDNSCMIS 1140 EACDHLISDN EVRQNVQSTN GGNDVEPISC DHKLIDEPPA STGESCEDMR EISTAESLQD 1200 NLQHERNIGN GSNEELVSSS VTMMIQPTSA PMEISEVPSK ECAAADLLNV GTKQKLISSC 1260 VSRMEVDQPS PLKVGGCSEV PIEICTKEDS GADMTLDPRT RLQNHTTAEA IMDELVCNSS 1320 AQLEENERIP TSIAACSEES NGIFAEEKMD FEMTIGTQTK NAASEEPKPT SLIPIDQPIP 1380 AVIRKYSRTR RESYSAEKFC NGNEAYSSKD NKERGCNEPN LEDPSSSAGK GRKRNRELER 1440 LTENKLNGSG FIRSPCEGLR SRAGKDAANT SEVDIRKIAE KRATKTMRNR ESVPAPCQDK 1500 KKILKGHHRC DLDGCRMSFE TKRELSLHKR NRCPHEGCGK RFSSHKYAII HQRVHDDERP 1560 LKCPWKGCSM SFKWAWARTE HIRVHTGERP YKCKFEGCGL SFRFVSDISR HRRKTGHYEN 1620 LSA

Sequence ? help Back to Top

Protein Sequence Length: 1623 aa Download sequence

MGNNSNNNVE IPKWLQGLPL APVFYPTDTE FADPIAYISR IEKEASAFGI CKIVPPLPKP  60
SKKYVFGNLN KSLSKCSELG SDVNLPDAGT VATVGCCERG NEGEARAVFT TRHQELGQSV  120
KRIKGVDNKD NLQLGAQKQV WQSGEVYTLE QFESKSKAFA RSLLSVIKEV SPLVIEALFW  180
KAASEKPVYV EYANDVPGSG FGEPEGQFRY FHRRRRKVTS WKSYRNRGKA DEKNIELESA  240
RNCHNDQITH SCDKNDLETP TSSTPSSTLP FDENSRSSRR KSVTGSNDVE GTAGWKLSNS  300
PWNLQVISRS PGSLTRFMPD DIPGVTSPMV YIGMLFSWFA WHVEDHELHS MNFLHTGAPK  360
TWYAIPGDYA FTFEEVIRNE AYGGDIDRLA KSQFPVLPAA LSLLGEKTTL ISPEVIAASG  420
IPCCRLVQNP GEFVVTFPRA YHAGFSHGFN CGEAANFGTP QWLMVAKEAA VRRAAMNYLP  480
MLSHQQLLYL LTMSFISRVP RSLLPGARSS RLRDRQKEER ELLVKKAFVE DILKENNILS  540
VLLGRQSTFN AVLWNADLLP CQSKESQMPS ANETVSTTPG ETVPNNPYEK HNDHNNLLDE  600
MNVYMEALND PYMGDDDISR DFHIDSGALA CVACGILGFP FMSVVQLSER ASIELLADLV  660
KEGPGVSELK NTHHHTNLDG SVKSSVSDDL SLVPDISLLQ KDLSVPSITK SSRIWNTSNK  720
YLRPRIFCLE HAAQIEEILQ SKGGAEILVI CHSDYQKIKA HAAAVAEEIG SPFNYIDVPL  780
DAASEEDLHL IDLAIDDGEL DECREDWTSK LGINLRHCVK VRKNSPSMRV QHALSLGDLF  840
SEKSLSSDFS KIKWQFRRSR SKIKLYGRAH SKPCQNIEIK KDEVTGRKLD GATVKKEEKL  900
IQYSRRKFKQ KPDLSTGACG DQVHPRELLP EVSAATCDHL DGHNRSDFEI NPDGTGNSGS  960
ISAGSIHSPI GMSEGLHDIP VREATSNLSL NYSPSRVADS LATATLVVDS IVQNDTESMK  1020
ELNIEGDIFH MATCKSAEMQ QNSGTDVTSE ETEISHHTVA SNEGSIIMRS DQITESMTIK  1080
NEKCNLASEG HCRKVADKDV LMIEVSGLAN SASFRVASSP LRSLDAQIEN LAPDNSCMIS  1140
EACDHLISDN EVRQNVQSTN GGNDVEPISC DHKLIDEPPA STGESCEDMR EISTAESLQD  1200
NLQHERNIGN GSNEELVSSS VTMMIQPTSA PMEISEVPSK ECAAADLLNV GTKQKLISSC  1260
VSRMEVDQPS PLKVGGCSEV PIEICTKEDS GADMTLDPRT RLQNHTTAEA IMDELVCNSS  1320
AQLEENERIP TSIAACSEES NGIFAEEKMD FEMTIGTQTK NAASEEPKPT SLIPIDQPIP  1380
AVIRKYSRTR RESYSAEKFC NGNEAYSSKD NKERGCNEPN LEDPSSSAGK GRKRNRELER  1440
LTENKLNGSG FIRSPCEGLR SRAGKDAANT SEVDIRKIAE KRATKTMRNR ESVPAPCQDK  1500
KKILKGHHRC DLDGCRMSFE TKRELSLHKR NRCPHEGCGK RFSSHKYAII HQRVHDDERP  1560
LKCPWKGCSM SFKWAWARTE HIRVHTGERP YKCKFEGCGL SFRFVSDISR HRRKTGHYEN  1620
LSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein