PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY56862.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 576aa MW: 61063.5 Da PI: 7.2072

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY56862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.2	1.2e-37	173	288	3	115
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........kaak 92 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ GAY56862.1 173 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaphsF--- 268 6799****************************************************************9998889999999977777654433330... PP TCP 93 saakskksqksaasalnlakesr 115 ++ + + aa+++n ++ ++ GAY56862.1 269 ---HGALALAAAAQHHNHHHPHH 288 ...33333333333344333322 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MELTTDLQSN KQNTTTTTTN SASAAAELQR QQQHHRHLHL PQQQFDGRSV PFISSISIQA 60 GLSHGGGGGG GGGSGGAVHV ITSSSSTTAS SSTTGSSSSS SLSSSSSLTL SSPSSTNPVP 120 PTQHAVVDAS LAIATRSSST PAPNNQQNLN MTATASTSTT TAITTTTTTA PPPVKRSTKD 180 RHTKVDGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA 240 NFSTLNVSLR SSGSTLSAPP SKSAPHSFHG ALALAAAAQH HNHHHPHHPH PQYEEGFPHT 300 ALLGFHHQQQ QQQHHLMTAD QIAEALPSES GGGDNNNSNE NYMRKRFRED LFKDDHTNSS 360 NDNGNNNDQS QGESGGGGEE RRKQMQNKQQ QQQVLPATPM WAVTPGPPSS GAGSTFWMVT 420 GASGAAAGAG PSEQQPQPQP QIWPFQHPVA AATPSTATTL QAPLHFVPRF NLPTGNLEFQ 480 TGRAANPLQL GSMLMHQHQH QQQPSQQLGL GMNESNLGML AALNAVYSRA GGLNMNMNMT 540 AEQNNPMEHH HHHQHHQQQQ PQGSDSGGDE DPNNSQ

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MELTTDLQSN KQNTTTTTTN SASAAAELQR QQQHHRHLHL PQQQFDGRSV PFISSISIQA  60
GLSHGGGGGG GGGSGGAVHV ITSSSSTTAS SSTTGSSSSS SLSSSSSLTL SSPSSTNPVP  120
PTQHAVVDAS LAIATRSSST PAPNNQQNLN MTATASTSTT TAITTTTTTA PPPVKRSTKD  180
RHTKVDGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA  240
NFSTLNVSLR SSGSTLSAPP SKSAPHSFHG ALALAAAAQH HNHHHPHHPH PQYEEGFPHT  300
ALLGFHHQQQ QQQHHLMTAD QIAEALPSES GGGDNNNSNE NYMRKRFRED LFKDDHTNSS  360
NDNGNNNDQS QGESGGGGEE RRKQMQNKQQ QQQVLPATPM WAVTPGPPSS GAGSTFWMVT  420
GASGAAAGAG PSEQQPQPQP QIWPFQHPVA AATPSTATTL QAPLHFVPRF NLPTGNLEFQ  480
TGRAANPLQL GSMLMHQHQH QQQPSQQLGL GMNESNLGML AALNAVYSRA GGLNMNMNMT  540
AEQNNPMEHH HHHQHHQQQQ PQGSDSGGDE DPNNSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-56	TCP family protein