PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY56379.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 810aa    MW: 89317.4 Da    PI: 6.4256
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY56379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181775357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  GAY56379.1 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                5679*****************************************************97 PP
2START147.89.7e-471613382174
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++e+l+v+ ++  g+++l +++l
  GAY56379.1 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCSGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVEVLNVLPTAngGTIELLYMQL 258
                 789*******************************************************.8888888888****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                 +al++l+p Rdf+ +Ry+  l++g++v++++S+ + q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl++
  GAY56379.1 259 YALTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNIQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEA 338
                 ***********************************99999988899********************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    
MAMSCKDGKT GSLDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TQSTTLATKD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSVGIVAISH GCSGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAVEVL  240
NVLPTANGGT IELLYMQLYA LTTLAPARDF WLLRYTSVLE DGSLVVCERS LKNIQNGPTM  300
PPVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEALR QLRQMAQEVT QSSVNGWGRR  360
PAALRALSQR GFNEAVNGFT DEGWTVMGND GMDDVTVLVN SSPDKLMGLN LSFANGFPAV  420
SNAVLCAKAS MLLQNVPPAI LLRFLREHRS EWADNNIDIY SAAAIKVGPC SLPGSRVGTF  480
GSQVILPLAH TIEHEEFMEV IKLEGVGHSP EDAIMPRDMF LLQLCSGMDE NAVGTCAELI  540
FAPIDASFAD DAPLLPSGFR IIPLDSGKET SSPNRTLDLA SALEIGPAGN RATNNYSTNS  600
TCMRSVMTIA FEFAFESHMQ EHVATMARQY VRSIISSVQR VALALSPSNI SSQAGLRTPL  660
GTPEALTLAR WICHSYRCYL GVDLLKSSSE GSESILKNLW HHTDAVMCCS LKALPVFTFA  720
NQAGLDMLET TLVALQDITL EKIFDDHGRK ALFAEFPQIM QQGFACLQGG ICLSSMGRPV  780
SYERAVAWKV LNEEETAHCI CFMFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein