PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55745.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 477aa MW: 52198.4 Da PI: 8.9042

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H GAY55745.1 81 FVCEVCNKGFQRDQNLQLHRRGH 103 89*******************88 PP
2	zf-C2H2	13.9	0.00017	158	180	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ GAY55745.1 158 WKCEKCSKVYAVQSDWKAHSKTC 180 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MFPPAAGAAI SNSTSLSEEA ASVSSGTRVQ DFGGLNLIAS TISPQQQSQK VKKKRSLPGN 60 PDPDAEVIAL SPKTLLATNR FVCEVCNKGF QRDQNLQLHR RGHNLPWKLK QRNNKDIIKK 120 KAYVCPEPSC VHHHPSRALG DLTGIKKHFC RKHGEKKWKC EKCSKVYAVQ SDWKAHSKTC 180 GTREYRCDCG TLFSRKDSFI THRAFCDALA EESARLSANQ LATTINTNGH PLHIASQNHS 240 SSSLFPFTTT HIALTPWDPP QNPNPNRNNP NNDPHPNPLY IKSETHHFQI PPPLSSSQYF 300 QEPQAVAATT KALITSPYQD LHMRTQPSLN ASATSAHHMS ATALLQKAAT VGSATAAQQV 360 HQSMGHHMTT TQLNMGELAA FNSVSHISPD AYLGFTSGNL STWQKSDRLT RDFLGLTGDG 420 NGDENVNGGA NAGVNVRNAL TYTAGLDFHP FERGHTLLRP QGFGFAEPAE SETWGDC

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MFPPAAGAAI SNSTSLSEEA ASVSSGTRVQ DFGGLNLIAS TISPQQQSQK VKKKRSLPGN  60
PDPDAEVIAL SPKTLLATNR FVCEVCNKGF QRDQNLQLHR RGHNLPWKLK QRNNKDIIKK  120
KAYVCPEPSC VHHHPSRALG DLTGIKKHFC RKHGEKKWKC EKCSKVYAVQ SDWKAHSKTC  180
GTREYRCDCG TLFSRKDSFI THRAFCDALA EESARLSANQ LATTINTNGH PLHIASQNHS  240
SSSLFPFTTT HIALTPWDPP QNPNPNRNNP NNDPHPNPLY IKSETHHFQI PPPLSSSQYF  300
QEPQAVAATT KALITSPYQD LHMRTQPSLN ASATSAHHMS ATALLQKAAT VGSATAAQQV  360
HQSMGHHMTT TQLNMGELAA FNSVSHISPD AYLGFTSGNL STWQKSDRLT RDFLGLTGDG  420
NGDENVNGGA NAGVNVRNAL TYTAGLDFHP FERGHTLLRP QGFGFAEPAE SETWGDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-122	C2H2 family protein