PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY55589.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 459aa MW: 49948.1 Da PI: 8.587 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 4.1e-05 | 34 | 54 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H GAY55589.1 34 CEICGKGFQRDQNLQLHRRGH 54 *******************88 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00021 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ GAY55589.1 108 WKCEKCSKRYAVQSDWKAHSKTC 130 58*****************9998 PP | |||||||
3 | zf-C2H2 | 11.5 | 0.00092 | 138 | 156 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + GAY55589.1 138 DCGTVFSRRDSFITHRAFC 156 8**************8765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence |
MLDKMPEDTI PNDPEAEVIA LSPKTLMATN RFLCEICGKG FQRDQNLQLH RRGHNLPWKL 60 KQRTSKEVRK RVYVCPEKTC VHHHPSRALG DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ 120 SDWKAHSKTC GTREYKCDCG TVFSRRDSFI THRAFCDALA EETARVNAAS SMNSLANGSI 180 SYHFMGTPLG PSVAQHFSSI FKPIPGGGAD ETIDQTRRGL SLWMAPGSQG HETVGSNLTE 240 IQQLGSVSSE AMYGDHPPPS DYHFNWVFGN NKQSSNNAAE APAIASASLP LTGVKEAAAT 300 ASHHHQLVSV NVPSLYSSQQ QQTTTHQTQA AAAAANMSAT ALLQKAAQIG SASTDPSLFL 360 GSLGFKCSSN INQVQDGNKY CGLMYCSNAI ADRHLGNDVE ISSASDISSL SQLQMPPPAK 420 RRHLQSDRQA ESAGGQTRDF LGVGVQAISC HPSSINGWI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.2 | 1e-139 | C2H2 family protein |