PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55580.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HB-other

Protein Properties

Length: 1750aa MW: 196297 Da PI: 5.213

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55580.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	21	77	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ ++yps++ r+eL+++lgL++rq ++WF+ rR k++k GAY55580.1 21 KTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 77 6799***************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1750 aa Download sequence
MEAASEAEEK KKKKPLEAEV KTKRKMKTAS QLEILEKTYA VESYPSEALR AELSAQLGLS 60 DRQLQMWFCH RRLKDRKAPT AKRQPKDFQS LVPAGEKELA GSELVRGGMA VQRFYEVPMA 120 PMLPFPLPQR NIAEMRAIAF VESQLGEPLR EDGPILGVEF DSLPPDAFGR PIGPAAMGHQ 180 KHSVRPLEAK EYERLDVKPF KGATRTVHEY KFLPEQPTVR SETHEKAASS YPYGSPADGS 240 TARNSSLRAG HPFMHGSEQI SSGYGFPGQL PNLNLLSHQG RHSHLLPSVS GEYENILRKN 300 SFISAGMDAH VGGQPITAMD NAFISSDRRV SHDEDVSRTE KKRKSEEARI AREVEAHEKR 360 IRKELEKQDI LRRKREEQIR KEMERQDRER RKEEERLLRE KLREEERYLR EQRRELERRE 420 KFLQKESIRA EKRRQKEELR RVKEAERLKV ANERAVARRI AKESMALVED ERLELMELAA 480 SSKGLPTIVS LDFETLQNLD LFRDRPCTFP PKSVQLKRPF AVQPWNDSED NIGNLLMVWR 540 FLITFADVLG LWPFTLDEFV QAFHDYDPRL LGEIHVALLR SVIKDIEDAA KTPFTGLGAN 600 QNSAVNPGGA HPQIVEGAYA WGFDIRSWQL HLNALTWPEI LRQFALSAGF GPQLNKRNIE 660 KMYPHDNNEG NDGENIISNL RNGSAVGNAV AIMHEMGLSN LRRSRHRLTP GTVKFAAFHV 720 LSLEGSEGLT ILEVADKIQK SGLRDLTTSK TPEASIAAAL SRDTKLFERT APSTYCVRAA 780 YRKDPGDADA ILSAARERIR VFKRGFVDGE EADDAERDEE RDEDSDSDVP EVPDVYDMDT 840 DLNSKEETHE SLEANSCGAK TPLGNREANI KGIESPQGDL GNSGRGLSSK NSEDFDEIKG 900 TGALTDHCED AAGISNAATP DQTHTDINES HPGEPWVQGL TEGEYSDLSV DERLSALVAL 960 IGVAIEGNSV RIALEERLEA ANALKKQMWA ETQLDKRRIK EDCMLKMQYS SYMGNKAEPS 1020 LAISSADGRQ SPLVTVDDKS NGMLVDLNLQ QGQFGEPQKD QNCNTSMPPE GNQDYPVGPD 1080 NLVNQQSAYA AEKSRMQLKS YIGQKAEETY VCRSLPLGQD RRRNRYWRFI TSMSENDPGC 1140 GRIFVELCDG RWRLIDSEES FDALLTSLDV RGLRESHLHS VLQMIEMSFK ETVRRNLQHV 1200 TTEVQNQETV KAEVIERASC PDYTGTDNPS NIVCDSDSEI SDTSTSFSIE LGRDDVLRND 1260 ALKRYQDYER WMWKECVNSS ILCAMEYGKK RCKQVLGVCD YCHDLYFFED SHCPSCHKTF 1320 DTSKRYLNFS EHVAQCQGKL KMNPAWSSCT SFSSPLRIRL LKVLLALFEG SVPSEAFQSI 1380 WNDSYRNSWG MKLNSSLSAD SLVQILTQLE NAIKRDYLSS NFETTSEFLD SSNSSACTFN 1440 SSSSPEIVSV LPWVPITTAA VGLRLMELDR SIAYLPHQRV EFQKEKREGN LMLPSKYAAV 1500 KNTRDGEDQV NYLQVEEANR VGVGIGFAAP SHGRGICGGA RGCLNTGRSQ KRVAGSRRDS 1560 GKRSTNTKSG RLVLVLKGQS HGQGSRKRGR RSARSRRKST KRVVVEKDAP KQSIFDKPRD 1620 LAGDGWNRDE IPRLQVDDAE NASISGRSGY GEENGQATGD EYNDMIDEYA GGFNSRSNDL 1680 QEGSDDIVDG DEEDDEDEMG DGGAEDEQGY LDVEEYVNEE SDEEGIRDGD GGQIGDPDEG 1740 TGASSSDLSD

Sequence ? help Back to Top

Protein Sequence Length: 1750 aa Download sequence

MEAASEAEEK KKKKPLEAEV KTKRKMKTAS QLEILEKTYA VESYPSEALR AELSAQLGLS  60
DRQLQMWFCH RRLKDRKAPT AKRQPKDFQS LVPAGEKELA GSELVRGGMA VQRFYEVPMA  120
PMLPFPLPQR NIAEMRAIAF VESQLGEPLR EDGPILGVEF DSLPPDAFGR PIGPAAMGHQ  180
KHSVRPLEAK EYERLDVKPF KGATRTVHEY KFLPEQPTVR SETHEKAASS YPYGSPADGS  240
TARNSSLRAG HPFMHGSEQI SSGYGFPGQL PNLNLLSHQG RHSHLLPSVS GEYENILRKN  300
SFISAGMDAH VGGQPITAMD NAFISSDRRV SHDEDVSRTE KKRKSEEARI AREVEAHEKR  360
IRKELEKQDI LRRKREEQIR KEMERQDRER RKEEERLLRE KLREEERYLR EQRRELERRE  420
KFLQKESIRA EKRRQKEELR RVKEAERLKV ANERAVARRI AKESMALVED ERLELMELAA  480
SSKGLPTIVS LDFETLQNLD LFRDRPCTFP PKSVQLKRPF AVQPWNDSED NIGNLLMVWR  540
FLITFADVLG LWPFTLDEFV QAFHDYDPRL LGEIHVALLR SVIKDIEDAA KTPFTGLGAN  600
QNSAVNPGGA HPQIVEGAYA WGFDIRSWQL HLNALTWPEI LRQFALSAGF GPQLNKRNIE  660
KMYPHDNNEG NDGENIISNL RNGSAVGNAV AIMHEMGLSN LRRSRHRLTP GTVKFAAFHV  720
LSLEGSEGLT ILEVADKIQK SGLRDLTTSK TPEASIAAAL SRDTKLFERT APSTYCVRAA  780
YRKDPGDADA ILSAARERIR VFKRGFVDGE EADDAERDEE RDEDSDSDVP EVPDVYDMDT  840
DLNSKEETHE SLEANSCGAK TPLGNREANI KGIESPQGDL GNSGRGLSSK NSEDFDEIKG  900
TGALTDHCED AAGISNAATP DQTHTDINES HPGEPWVQGL TEGEYSDLSV DERLSALVAL  960
IGVAIEGNSV RIALEERLEA ANALKKQMWA ETQLDKRRIK EDCMLKMQYS SYMGNKAEPS  1020
LAISSADGRQ SPLVTVDDKS NGMLVDLNLQ QGQFGEPQKD QNCNTSMPPE GNQDYPVGPD  1080
NLVNQQSAYA AEKSRMQLKS YIGQKAEETY VCRSLPLGQD RRRNRYWRFI TSMSENDPGC  1140
GRIFVELCDG RWRLIDSEES FDALLTSLDV RGLRESHLHS VLQMIEMSFK ETVRRNLQHV  1200
TTEVQNQETV KAEVIERASC PDYTGTDNPS NIVCDSDSEI SDTSTSFSIE LGRDDVLRND  1260
ALKRYQDYER WMWKECVNSS ILCAMEYGKK RCKQVLGVCD YCHDLYFFED SHCPSCHKTF  1320
DTSKRYLNFS EHVAQCQGKL KMNPAWSSCT SFSSPLRIRL LKVLLALFEG SVPSEAFQSI  1380
WNDSYRNSWG MKLNSSLSAD SLVQILTQLE NAIKRDYLSS NFETTSEFLD SSNSSACTFN  1440
SSSSPEIVSV LPWVPITTAA VGLRLMELDR SIAYLPHQRV EFQKEKREGN LMLPSKYAAV  1500
KNTRDGEDQV NYLQVEEANR VGVGIGFAAP SHGRGICGGA RGCLNTGRSQ KRVAGSRRDS  1560
GKRSTNTKSG RLVLVLKGQS HGQGSRKRGR RSARSRRKST KRVVVEKDAP KQSIFDKPRD  1620
LAGDGWNRDE IPRLQVDDAE NASISGRSGY GEENGQATGD EYNDMIDEYA GGFNSRSNDL  1680
QEGSDDIVDG DEEDDEDEMG DGGAEDEQGY LDVEEYVNEE SDEEGIRDGD GGQIGDPDEG  1740
TGASSSDLSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	367	KKRKSEEARIAREVEAHEKRIRKELEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein