PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY55425.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 353aa MW: 41324.9 Da PI: 8.7918 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.1 | 1.1e-06 | 149 | 165 | 6 | 22 |
-SGGGGTS--TTTTT-S CS zf-CCCH 6 CrffartGtCkyGdrCk 22 C+f+++tG C++G rC+ GAY55425.1 149 CPFHLKTGACRFGQRCS 165 ****************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence |
MEDNECRDGG KKCSHVSNRY HPSPHLDTYP PIRRWGRREL ATYPPLAHQL RRVLRASRIW 60 RRKENECDED DDWEYVEEGP TEIIWQGNEI IIRMKKVRVL KKDANPLSKK EDVDRPTSNP 120 LPPQSEAFAD HQNAQQELET VAQQDKVHCP FHLKTGACRF GQRCSRVYFY PDKSCTLLIK 180 NMHNGPGLAW EQDEGLEVCR NGFSHLRGNI YVHYKSLESA VLAYHSINGR YFAGKQTCSR 240 GMARNFIHCF RNPGGDYEWA DLDKPPPRYW VKKMAALFGQ TRNKIDSTNA DRHHYRRSRL 300 READRVKSGS GRSHDDERQV HETTWSRRRS NYHSESRSDE ANSDGSWSDR DRD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 1e-104 | C3H family protein |