PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55380.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 477aa MW: 54242.2 Da PI: 8.6659

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67	4.7e-21	96	186	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +Y++YA+++GF vr+++ +++ ng+it rt+vCs+eg+r+ + + ++++r++r+ tr gC+a++++ +++ +++w + ++ HnH+l+p GAY55380.1 96 CYRQYARKAGFGVRRDNIRRN-VNGNITGRTWVCSREGFRAAKYLQkRSRQREPRPLTRSGCQAQFRIILNSeTKRWSCNYFHAVHNHNLTP 186 7**************9998.8999**********9987664678899**************999*************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MKNSNEEQED RDDLEYPVIT EADIDGWWNV SSNDEGEAHN DDSGSIELQA AINNEMGTNQ 60 NQTDRQQCTE RDENDGLAMP TMLGREFGSE EQAETCYRQY ARKAGFGVRR DNIRRNVNGN 120 ITGRTWVCSR EGFRAAKYLQ KRSRQREPRP LTRSGCQAQF RIILNSETKR WSCNYFHAVH 180 NHNLTPPQLV HHIRSHRTVT DPDLVMAASL QRVGVTPSQI HEFMVDRSGG YNRVGYNRMY 240 ERQAAVTYTR AMFRLVRDEL EKEGLLMAII GGRDVMSTTY FVRHFGVSGN EVKVVITKPT 300 NTVCCCCKLF ETIGILCSHT FVVLKAENIT EIPRSIILSR WTKDAKIMDH GSLETCSTIA 360 HYMTEEARVG LIFSSCRNLL RYAASSIGAY NVAITNIHNL TLRSDNVVQD PDIVLTKGSL 420 KRPKLGQQQQ RKCSRCGVPG HNVRKCKHNT RQNQPFEDSL KSYRKLSLPL STLGVNT

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MKNSNEEQED RDDLEYPVIT EADIDGWWNV SSNDEGEAHN DDSGSIELQA AINNEMGTNQ  60
NQTDRQQCTE RDENDGLAMP TMLGREFGSE EQAETCYRQY ARKAGFGVRR DNIRRNVNGN  120
ITGRTWVCSR EGFRAAKYLQ KRSRQREPRP LTRSGCQAQF RIILNSETKR WSCNYFHAVH  180
NHNLTPPQLV HHIRSHRTVT DPDLVMAASL QRVGVTPSQI HEFMVDRSGG YNRVGYNRMY  240
ERQAAVTYTR AMFRLVRDEL EKEGLLMAII GGRDVMSTTY FVRHFGVSGN EVKVVITKPT  300
NTVCCCCKLF ETIGILCSHT FVVLKAENIT EIPRSIILSR WTKDAKIMDH GSLETCSTIA  360
HYMTEEARVG LIFSSCRNLL RYAASSIGAY NVAITNIHNL TLRSDNVVQD PDIVLTKGSL  420
KRPKLGQQQQ RKCSRCGVPG HNVRKCKHNT RQNQPFEDSL KSYRKLSLPL STLGVNT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	146	KRSRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-26	FAR1 family protein