PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55278.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 387aa MW: 43581.1 Da PI: 6.6245

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.8	7e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA ELS+LCd+++ +++fs+tg+ GAY55278.1 9 KRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGR 53 689****************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KARELSILCD IDIVLLMFSP TGRSTLFHGQ 60 RSNIEEVIAR FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGAS TQTVEELTHQ 120 VRILQAQLTE VHQRLRQKHL PCECANQGAD EGFKRSYQAC YWSNPGNIES IEHLRQMENS 180 LRESINQICL HKENFGKQQL MSLEFAGQSG MHLPLMMNVM QENQSLSWLP NNDNQHMLVP 240 NDPSFLPQRD MGCSEDAHIS SYSGFLGAGK EIEVGNSGQV ENMEHGGGNL NELSNNACIS 300 LQLGEQYSYP PYSSLNLPSD DKKLKPDAEM NLQGNPAVYQ VNSNFELSGP MYGNGHHDWV 360 SASGPCGIAM FDENSYHQGS ALDQNKV

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MGRVKLKIKR LESTSNRQVT YSKRRNGILK KARELSILCD IDIVLLMFSP TGRSTLFHGQ  60
RSNIEEVIAR FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGAS TQTVEELTHQ  120
VRILQAQLTE VHQRLRQKHL PCECANQGAD EGFKRSYQAC YWSNPGNIES IEHLRQMENS  180
LRESINQICL HKENFGKQQL MSLEFAGQSG MHLPLMMNVM QENQSLSWLP NNDNQHMLVP  240
NDPSFLPQRD MGCSEDAHIS SYSGFLGAGK EIEVGNSGQV ENMEHGGGNL NELSNNACIS  300
LQLGEQYSYP PYSSLNLPSD DKKLKPDAEM NLQGNPAVYQ VNSNFELSGP MYGNGHHDWV  360
SASGPCGIAM FDENSYHQGS ALDQNKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-103	M-type_MADS family protein