PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GAY55277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 401aa MW: 45433.4 Da PI: 7.6017 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.7 | 7.3e-24 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA ELS+LCd+++ +++fs+tg+ GAY55277.1 9 KRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGR 53 689****************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 401 aa Download sequence |
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KARELSILCD IDIVLLMFSP TGRSTLFHGQ 60 RSNIEEVIAR FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGAS TQTVEELTHQ 120 VRILQAQLTE VHQRLRQKHL PCECANQGAD EGFKRSYQAC YWSNPGNIES IEHLRQMENS 180 LRESINQICL HKENFGKQQL MSLEFAGQSG MHLPLMMNVM QENQSLSWLP NNDNQHMLVP 240 NDPSFLPQRD MGCSEDAHIS SYSGFLGAGK EIEVGNSGQV ENMEHGGGNL NELSNNACIS 300 LQLGEQYSYP PYSSLNLPSD DKKLKPDAEM NLQGNPAVYQ VNSNFELSGP MYGNGHHDWV 360 SASGPCGIAM FDENSYHQMR FLIYKENSKR WAKAIRTSGV K |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-103 | M-type_MADS family protein |