PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55118.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CO-like

Protein Properties

Length: 436aa MW: 47337.6 Da PI: 4.7433

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55118.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.7	7.2e-06	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C+ +++++ + +C+++ +lC +C + H H+ GAY55118.1 4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLAnalskrHS 43 6**************************9994334555565 PP
2	zf-B_box	22.7	2e-07	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + ++ lC++C +H g H++++ GAY55118.1 46 LLCERCNSQPALVRCAEERVSLCQNCDWIGH-GtstsassHKRQT 89 57*****************************.5588888888766 PP
3	CCT	59.1	1.5e-20	377	420	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktRkF+K++rY+sRKa+A+ R RvKGrFvk+ GAY55118.1 377 RSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAG 420 889**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MGYMCDFCGD QRSIVYCRSD AACLCLSCDR NVHLANALSK RHSRTLLCER CNSQPALVRC 60 AEERVSLCQN CDWIGHGTST SASSHKRQTI NCYSGCPSAS ELSSIWSFVL DFPSGGESAC 120 EQELGLMSIT DNSIKNSWGP NEDSISQNAA GGGVEANDVC DADKSNVRVG ATSVPGINST 180 TQNLDQIHGS ANNPPLPKND LLELRFDLNS HLADLCCSAT KGLAFCEDDD LYEDFNMDEM 240 DLNFENYEEL FGVTLNHSEE LLENGGIESL FGTKDMSAAD SNCQGAVAAE GSSAGLVNAM 300 QPACSNAASA DSIMSTKTEP ILCFTAKQGH SSLSFSGLTG DSNAGDYQEC DASSMLLMGE 360 PPWCPPCPET SFTSASRSKA VLRYKEKKKT RKFDKRVRYA SRKARADVRR RVKGRFVKAG 420 EAYDYDPLTQ TETRSY

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MGYMCDFCGD QRSIVYCRSD AACLCLSCDR NVHLANALSK RHSRTLLCER CNSQPALVRC  60
AEERVSLCQN CDWIGHGTST SASSHKRQTI NCYSGCPSAS ELSSIWSFVL DFPSGGESAC  120
EQELGLMSIT DNSIKNSWGP NEDSISQNAA GGGVEANDVC DADKSNVRVG ATSVPGINST  180
TQNLDQIHGS ANNPPLPKND LLELRFDLNS HLADLCCSAT KGLAFCEDDD LYEDFNMDEM  240
DLNFENYEEL FGVTLNHSEE LLENGGIESL FGTKDMSAAD SNCQGAVAAE GSSAGLVNAM  300
QPACSNAASA DSIMSTKTEP ILCFTAKQGH SSLSFSGLTG DSNAGDYQEC DASSMLLMGE  360
PPWCPPCPET SFTSASRSKA VLRYKEKKKT RKFDKRVRYA SRKARADVRR RVKGRFVKAG  420
EAYDYDPLTQ TETRSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-129	CO-like family protein