PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55045.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YC

Protein Properties

Length: 296aa MW: 32892.2 Da PI: 5.3058

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.1	1.7e-17	22	96	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl div r GAY55045.1 22 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLRDIVSR 96 8***********************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MRKSLDTPVF QLLSGIHVEA RARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT 60 YEITLQRGAK TMSSLHLKHC VQSYNVFDFL RDIVSRVPDY SHGHSDATSE DRSISKRRKA 120 AGDECNDSDE ESKRSRMHEM GHVTGSGRGR GRGRGRGRGR GARHLERESS HREVEPEPRT 180 APQHGASDNS NSTMLVDNAS ESKEQPKENV IASDGVNPAT RNFDLNADLD ENVDTKTAAP 240 AAPTQPSSAG PSEETKHEEY PGWSLSEMDR MAIDPLQIAN LSRRIDEEEE DYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	28	ARARIKKIM
2	148	157	RGRGRGRGRG
3	148	158	RGRGRGRGRGR
4	150	159	RGRGRGRGRG
5	150	160	RGRGRGRGRGR
6	152	161	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-73	NF-YC family protein