PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY53984.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 303aa MW: 34840 Da PI: 9.958

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY53984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	91	133	4	44
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W Ed+l+ +a +++ + +W +Ia+ ++ g+++ ++++++ GAY53984.1 91 WNRSEDKLFEHALVMFPEEspdRWQKIASQLP-GKSAVEVREHY 133 999************99*********.********9 PP
2	Myb_DNA-binding	46.4	9.3e-15	184	228	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky GAY53984.1 184 PWTEEEHKLFLIGLKKFGKGDWRSISRNVVVTRTPTQVASHAQKY 228 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MTKQNSKNSK SQIFFTLSYK YPKQKALTLK IKISHQTKLF SYVRNLQEST KSFLIESFKQ 60 TPYRRLSMYQ QDIKNDDSNN NSFAMTHSTH WNRSEDKLFE HALVMFPEES PDRWQKIASQ 120 LPGKSAVEVR EHYEALVHDV YEIDSGRVEL PSYADDSDWD SPSQISFAPK STKHGDPERK 180 KGTPWTEEEH KLFLIGLKKF GKGDWRSISR NVVVTRTPTQ VASHAQKYFL RQTSVKKERK 240 RSSIHDITTV DNPSVGLPVD QNWISSPGGT GPQQPPVLQQ FHPPNQFSGQ GGSLGYQNYG 300 FHM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-70	MYB family protein