PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GAY53398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 37010.7 Da PI: 6.444 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll++++ ++ g+W++ a++ g++Rt+k+c++rw++yl GAY53398.1 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL 70 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.7e-15 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E+ +++++ ++G++ W++Ia++++ gRt++++k++w++ GAY53398.1 76 RGNLTPQEQMSILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119 7999******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence |
MSSFSKSSTS SIYGENDSDQ LRRGPWTLEE DTLLIQYISR HSEGRWNLLA KRSGLKRTGK 60 SCRLRWLNYL KPDVKRGNLT PQEQMSILEL HSKWGNRWSK IAQHLPGRTD NEIKNYWRTR 120 VQKQARHLKI DANSTTFQEI IRCFWMPRLL QKMDTSSSSS PSALSQNPTI NSQPFDHAFH 180 HQGSASAQII SHQVPYDRGV IDHQELNSSS DSEHGIGTST SCISSSESMN FSQVSQFSEY 240 PTGGDHFHAS NNDSSEYNTF AKDFCQFDSN CYDMENISQP ETMPAPLAGD FNNWVQEYDL 300 VDNMWGAWMN FGNSGTHADI NEFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25340.1 | 9e-76 | MYB family protein |