PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY53357.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 488aa MW: 52904.4 Da PI: 9.9781

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY53357.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H GAY53357.1 64 FICEICNKGFQRDQNLQLHRRGH 86 89*******************88 PP
2	zf-C2H2	12.8	0.00036	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ GAY53357.1 141 WKCEKCSKKYAVQSDWKAHSKTC 163 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MMSGNAFTIP SSLGGFVHQE QNPNPNPKPN QAASKKKRNL PGTPDPDAEV IALSPKTLMA 60 TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTNKDV IKKKVYICPE KTCVHHEPSR 120 ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYKC DCGTLFSRKD 180 SFITHRAFCD ALAEESTRLA SSVVAAASNL NFRTDHTVNL PQGVPQDVAG SIPQFGSGFA 240 GLAEMVQMGS VSNNLFGSSS SNMGNFGHQF QGFHKSMAGA TTNSKSANLT LLSELKEETS 300 CLYNSDSTHE NKQLKPVAVG PMSATALLQK AAQMGSTRSN NNPITSIFGN GSGFNNVMSS 360 SSSSSNATSY NNNTSLHNTN LSGSAVTLAT SDGVMGSSNL RSMNTTTTAA AVATSDTLNQ 420 LMMMQTRGDQ QNEQQQQVQL KLTRDFLGMT SGNQVQSVRP FLPQELANFA SNIGSVSPIG 480 LSQFTSNN

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MMSGNAFTIP SSLGGFVHQE QNPNPNPKPN QAASKKKRNL PGTPDPDAEV IALSPKTLMA  60
TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTNKDV IKKKVYICPE KTCVHHEPSR  120
ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYKC DCGTLFSRKD  180
SFITHRAFCD ALAEESTRLA SSVVAAASNL NFRTDHTVNL PQGVPQDVAG SIPQFGSGFA  240
GLAEMVQMGS VSNNLFGSSS SNMGNFGHQF QGFHKSMAGA TTNSKSANLT LLSELKEETS  300
CLYNSDSTHE NKQLKPVAVG PMSATALLQK AAQMGSTRSN NNPITSIFGN GSGFNNVMSS  360
SSSSSNATSY NNNTSLHNTN LSGSAVTLAT SDGVMGSSNL RSMNTTTTAA AVATSDTLNQ  420
LMMMQTRGDQ QNEQQQQVQL KLTRDFLGMT SGNQVQSVRP FLPQELANFA SNIGSVSPIG  480
LSQFTSNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-119	C2H2 family protein