PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY53232.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 710aa    MW: 79724 Da    PI: 6.7577
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY53232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-193080656
                S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++t++q+++Le++F+ +++p++++r++L+k+lgL+ +q+k+WFqN+R++ k
  GAY53232.1 30 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 80
                689********************************************9987 PP
2START131.31.1e-412194423206
                 HHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
       START   3 aeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                 a  a++el++++  +ep+W k + + +++ +v+  ++ +kv            ++e ++ sg+v+m+ ++lve lld+  +W   ++    ka t++v+
  GAY53232.1 219 ATNAMDELIRLMRINEPLWIKPPsSTNIERYVIHPESYEKVfpranhfktssARVESSKYSGMVTMNGMQLVEMLLDSD-KWVDLFPtivsKARTIQVL 316
                 5689*******************54444444444444455599999*****99**************************.99999999999******** PP

                 CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
       START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                 ++g      g lqlm  ++  lsplv+ R+++f+R+++q + g wvivdvS + ++++ +ss++ R   lpSg++i+++ ng s+vtw+ehv++++++ 
  GAY53232.1 317 EPGingnrnGCLQLMHEQMHILSPLVSpREYYFLRHCQQIELGLWVIVDVSYEWPKDNISSSHCWR---LPSGFMIQDMTNGCSNVTWLEHVEVDDKTQ 412
                 ************************9999*****************************986777776...***************************999 PP

                 .HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 .hwllrslvksglaegaktwvatlqrqcek 206
                  h l+r l+ +  a ga +wv tlqr ce+
  GAY53232.1 413 tHRLYRDLICNNCAYGAERWVVTLQRTCER 442
                 8***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    
MDFVMGNSGD LGDEQDATNS QNKGKITCHR HTTHQIQTLE AFFKDCPHPD ENQRRQLSKE  60
LGLDLKQIKF WFQNKRTQTK AQNERANNSV LRAENERVHC ENLAIREALK NVICPSCGGP  120
PFGIEERQRS LQKLQLENSQ LKEEHEKVSN LLAKYIGKPI CQMNSSLMPS LPGSAILEHQ  180
NVLPPPILPV HQEMDIGLDL NLQFKGINDL EQSLMMETAT NAMDELIRLM RINEPLWIKP  240
PSSTNIERYV IHPESYEKVF PRANHFKTSS ARVESSKYSG MVTMNGMQLV EMLLDSDKWV  300
DLFPTIVSKA RTIQVLEPGI NGNRNGCLQL MHEQMHILSP LVSPREYYFL RHCQQIELGL  360
WVIVDVSYEW PKDNISSSHC WRLPSGFMIQ DMTNGCSNVT WLEHVEVDDK TQTHRLYRDL  420
ICNNCAYGAE RWVVTLQRTC ERLLAENSQS IHEVGGVINL PQGRKSLMKL AHRMVKNFCS  480
MLSMSGKLDF PQLSEVNNSG VRVSVRKSLG HGQPSGIVVS AATSLWLPLP SHNVFNFFKD  540
EKMRVQWDVL SNGSPVQEIV HISNGSHLGN CTSIIWPFIP TENNMLMLQE SCIDQLGSMV  600
VYAPIDIPSM NLAISGDDSS NIPILPSGFV ISRDGRQRDH YRASTSTETG FGTGTGIGTG  660
GSLLTVAFQI LVSSPSSSKE LNMESVATVN TLISSTVQRI KATLNCSNLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein