PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY53143.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 536aa    MW: 59838.7 Da    PI: 5.9702
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY53143.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.66e-1391665361374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L++cA+avs+++l la++l+ +l++++s +g+p+qRl ay++e+L arl++s+s+++k+l+++e +   ss+ l+++++++ev+P++kf+++ aN
  GAY53143.1 166 LKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSLRCKEPA---SSDLLSYMHILYEVCPYFKFGYMSAN 261
                 689******************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg++++ s   +   l  +g+rL+k+Ae+++vpf+f++ +  +  d++le+L v
  GAY53143.1 262 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAyaRGGGLGIVGKRLSKLAEQFRVPFDFHA-ANMSGYDVQLENLGV 359
                 **************************************************888788999************************.788999********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEa+aVn++++lh+++desvs+e++rd++L lvk+lsPkvv++veqe+++n++ F  rfleal+yy+a+f+s++++l+r+++eri++E+++l+r++v
  GAY53143.1 360 QPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVV 458
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++aceg er+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+++ ++ yr++e++g+l+lgW++r Lv+ +aWr
  GAY53143.1 459 NIIACEGPERIERHELLGKWRSRFTMAGFRPYPLSSVVNATIKTLLENYCNR-YRLQERDGALFLGWMNRDLVASCAWR 536
                 **************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    
MSGRLYYQPI QEIEPYCLPQ FQTVDHHLQY NDGGKGAHLS LQNSYEQYCT LESSSANGSY  60
TIYNSPSTVT FSPNGSPMSQ QESQSYPPDL HHSPDNAYGS PMSASCITND ASDLKHKLRE  120
LESVMLGPDS DIIDGIDSTY QSGTNKGSPE MDSGRQIIGA IAKGDLKHVL IACAKAVSEN  180
ELLLANWLMY ELRQMVSVSG EPIQRLGAYM LEGLVARLNS SGSSICKSLR CKEPASSDLL  240
SYMHILYEVC PYFKFGYMSA NGAIAEAMKD EDRVHIIDFQ IGQGSQWITL IQAFAARPGG  300
PPHIRITGID DSMSAYARGG GLGIVGKRLS KLAEQFRVPF DFHAANMSGY DVQLENLGVQ  360
PGEAVAVNFA FMLHHVPDES VSTENYRDRL LMLVKRLSPK VVTLVEQESN TNTAAFYPRF  420
LEALNYYTAM FESIDVNLAR DHKERINIEQ HCLARDVVNI IACEGPERIE RHELLGKWRS  480
RFTMAGFRPY PLSSVVNATI KTLLENYCNR YRLQERDGAL FLGWMNRDLV ASCAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein