PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY52908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | SRS | ||||||||
Protein Properties | Length: 230aa MW: 25650.7 Da PI: 8.6155 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 157.8 | 7.2e-49 | 13 | 150 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaa.saaeaaskrkrelkskkqsalsstklssaeskkele 101 g ++CqdCGnqakk+Ca++RCRtCCk rg++C+th+kstW+pa++r +r ++++ ++++ + + +++kr r ++ s+ l+ GAY52908.1 13 GVTRCQDCGNQAKKNCAYMRCRTCCKRRGYECETHIKSTWIPAYRRHQRYHHQHLVPVHEQHlQLQGHSPKRLR----------------ENPSSPGLQ 95 6689********************************************97766655333322022222222222................333444788 PP DUF702 102 tsslPeevsseavfrcvrvssvddgeee..laYqtavsigGhvfkGiLydqGlee 154 + ++P+e+ sea frcv+vss+dd+ + laY+t++s+gGh+fkGiLy+qG e+ GAY52908.1 96 IGNFPAEITSEATFRCVKVSSIDDAIDRttLAYKTSISVGGHIFKGILYYQGCES 150 899*********************6554349*********************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MMMNIRQLGA ELGVTRCQDC GNQAKKNCAY MRCRTCCKRR GYECETHIKS TWIPAYRRHQ 60 RYHHQHLVPV HEQHLQLQGH SPKRLRENPS SPGLQIGNFP AEITSEATFR CVKVSSIDDA 120 IDRTTLAYKT SISVGGHIFK GILYYQGCES NSNNNVGESS SSEPPPPPQH QQQPYYPFTV 180 AALTTTTAAT TTTTTALAAA DETPYSSSFT YPFGSYVSAG TQFFPKYPNS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-45 | SRS family protein |