PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY52798.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 492aa MW: 54879.7 Da PI: 7.0413

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY52798.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.4e-05	42	63	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F + L H+r H GAY52798.1 42 QCKVCGKDFESLKALYGHMRHH 63 7*******************99 PP
2	zf-C2H2	13.8	0.00017	72	93	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk + +L +H+r+H GAY52798.1 72 QCKECGKALLSAKSLSNHMRVH 93 8*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MDSAKGDDGH ISYDLRENPK KSWKFSSFNH AASASASTQE SQCKVCGKDF ESLKALYGHM 60 RHHSRRERER IQCKECGKAL LSAKSLSNHM RVHSQKLRPC NESGAVKSLV LKKKRSKRKR 120 YNFIASSSIS TLNESLSSVT EIDQELVQTA ISLMMLSRGV QDWGKFCSSS EFSCNDSVTI 180 EVKSFGKKKR LLTNRAGCSV SNGNGCLLKK PRLEKLDSIV LYEKEEDECH EVGSGAESDE 240 GKKVKLEVFI EKFYEEGEFE MPTLDVKPGS VASDDEIGKE SSGDLMEEDG LDAEAGKRII 300 TSTSSKKVGF NACYAEYGGD SSSKAMCNAS DYDVFDDPQK ESEIRCQACN KIFCSRRALG 360 GHQRMHSAKR SSLPAKTTMF TETEPDSKLV KLECIENLTQ RENKEHKCRI CLKVFATGQA 420 LGGHKRAHLV KNLDNILQDT TVEQDYSDLS NDLDLNISNT LEEEVHGDAG SEPWLVESKQ 480 HKHERLLSMM AS

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MDSAKGDDGH ISYDLRENPK KSWKFSSFNH AASASASTQE SQCKVCGKDF ESLKALYGHM  60
RHHSRRERER IQCKECGKAL LSAKSLSNHM RVHSQKLRPC NESGAVKSLV LKKKRSKRKR  120
YNFIASSSIS TLNESLSSVT EIDQELVQTA ISLMMLSRGV QDWGKFCSSS EFSCNDSVTI  180
EVKSFGKKKR LLTNRAGCSV SNGNGCLLKK PRLEKLDSIV LYEKEEDECH EVGSGAESDE  240
GKKVKLEVFI EKFYEEGEFE MPTLDVKPGS VASDDEIGKE SSGDLMEEDG LDAEAGKRII  300
TSTSSKKVGF NACYAEYGGD SSSKAMCNAS DYDVFDDPQK ESEIRCQACN KIFCSRRALG  360
GHQRMHSAKR SSLPAKTTMF TETEPDSKLV KLECIENLTQ RENKEHKCRI CLKVFATGQA  420
LGGHKRAHLV KNLDNILQDT TVEQDYSDLS NDLDLNISNT LEEEVHGDAG SEPWLVESKQ  480
HKHERLLSMM AS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	118	LKKKRSKR
2	114	120	KRSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-16	C2H2 family protein