PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY52739.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 388aa MW: 42556.1 Da PI: 6.651

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY52739.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	7.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl GAY52739.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.7e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l GAY52739.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPKN DALLSSDGQN KNSANLSHMA QWESARLEAE ARLVRESKLR SHSFQLGLIP 180 PPSASASASS SSVPPPASAS AQFIVNKTSA NNWTGIGGDL ESPTSTVTFS ENNNNNNLAP 240 PMMMSMIEFV GSSGSSDHQA SLIKEEGENN NLQKDWNKLG LENSLSFTSS TLHHHDMAIS 300 MEAAAEGPWN PDESFRVNNS TMEEGFTNLL LNDSIGDRPS LSDSGKDSEN SGGGDGGDSG 360 SDYYQDNKNY WNSILNLVNS SPSSSPMF

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DALLSSDGQN KNSANLSHMA QWESARLEAE ARLVRESKLR SHSFQLGLIP  180
PPSASASASS SSVPPPASAS AQFIVNKTSA NNWTGIGGDL ESPTSTVTFS ENNNNNNLAP  240
PMMMSMIEFV GSSGSSDHQA SLIKEEGENN NLQKDWNKLG LENSLSFTSS TLHHHDMAIS  300
MEAAAEGPWN PDESFRVNNS TMEEGFTNLL LNDSIGDRPS LSDSGKDSEN SGGGDGGDSG  360
SDYYQDNKNY WNSILNLVNS SPSSSPMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-120	MYB family protein