PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY52552.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 345aa MW: 38891.3 Da PI: 7.4375

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY52552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +k++G ++W++ ++ g+ R++k+c++rw +yl GAY52552.1 14 KGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	22.7	2.3e-07	165	189	23	48
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 W++Ia +++ gRt++++k+ w+++l GAY52552.1 165 KWSAIAGRLP-GRTDNEIKNVWHTHL 189 7*******.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGRAPCCEKM GLKKGPWTPE EDRILIVHIK KHGHPNWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF SKEEEETIIN LHDMLGNRYA SIIRSHISIL LLISLNFRDL RESNSSLILP 120 SYIYKGDLRG AGLWNRATEG QWPSSWINQI TFRPFFNNLD CGHLKWSAIA GRLPGRTDNE 180 IKNVWHTHLK KKAAAVLKQN QKANTNNNNS NSDDHKQNSK ATTAHDHQSA ESAMSPQASS 240 SSDELSSVTT GETNNNNNNN SDQYCMDKHV KSDHEQNVDS FESFPVIDES FWTDTSLSEN 300 SSNLTSDFGG GLNEFAMGHH DYGGGMDFWY NILVTSGADS LTLPF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGRAPCCEKM GLKKGPWTPE EDRILIVHIK KHGHPNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SKEEEETIIN LHDMLGNRYA SIIRSHISIL LLISLNFRDL RESNSSLILP  120
SYIYKGDLRG AGLWNRATEG QWPSSWINQI TFRPFFNNLD CGHLKWSAIA GRLPGRTDNE  180
IKNVWHTHLK KKAAAVLKQN QKANTNNNNS NSDDHKQNSK ATTAHDHQSA ESAMSPQASS  240
SSDELSSVTT GETNNNNNNN SDQYCMDKHV KSDHEQNVDS FESFPVIDES FWTDTSLSEN  300
SSNLTSDFGG GLNEFAMGHH DYGGGMDFWY NILVTSGADS LTLPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	3e-51	MYB family protein