PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY52437.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 296aa MW: 32642.8 Da PI: 7.6647

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY52437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.9	1.5e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l ++ reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l ++k+ GAY52437.1 7 PCAACKFLRRKCTQECVFAPYFPPAQPQKFANVHKVFGASNVAKLLNELATNLREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKK 105 7*********************************************************************************************99988 PP DUF260 100 e 100 e GAY52437.1 106 E 106 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP AQPQKFANVH KVFGASNVAK LLNELATNLR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ HRLKQVQSDL YSAKKELATY IGPQAMMPML 120 QAQAFMPQQH LGNPSSSTVI QHGMVPMMGI PTGSSHSGQL VIRDPQHQHQ HNQQQQQMFE 180 AQQLAAAVAA REQQEMLRSY EQQQELVRFN SGFDAPTGFN NQMSGGTMSP SLALGGFDNS 240 YQIQAQQQPA EHHHHHATAH PLQAQLLQQQ PPPPPQTQQQ QKSPSEEGRS IGGPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	9e-85	LBD family protein