PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY52409.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Protein Properties

Length: 450aa MW: 50234.1 Da PI: 6.4013

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY52409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.4	2.2e-17	137	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f k +++s+v + ++ lp f+++h + +++ ++ledesg +++ k+ +k++ l++GW++F a++L egD++vF+l+ +l+v ++r+ GAY52409.1 137 FAKSMVRSHVASCFWMGLPGYFCKSHLPD--KDTSVVLEDESGIQYTAKYFAEKTG----LSAGWRQFSTAHNLVEGDVLVFQLIA--PLKLKVYIIRA 227 889*********************544..4567***********555555....*********************997..77789999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MDLELEVKKE VVDEHVNTTK TTDDEEATIA QLSLLPASSK PKRKRKPKTI FSADEPMKPS 60 KKKGKIILKL KKSPPDTSVT SVPGTVEPDS RGGGKTKSSK KNKDVVDGKC SPVEPKSPAM 120 IRAEEVQSNL EPQFPSFAKS MVRSHVASCF WMGLPGYFCK SHLPDKDTSV VLEDESGIQY 180 TAKYFAEKTG LSAGWRQFST AHNLVEGDVL VFQLIAPLKL KVYIIRANDF TEGRSASNLG 240 QPAEQSENDS EEVGSEVLEG FKISTPPVQF KDVTSLDNFN ILVDGLVVDS ELPEDIRCNY 300 YKLCCSQNAF LHENLAQGIN FKLIVGTISE IVNIADALRA CKFTTSRDEF AMWDKTLKAF 360 ELLGMSVGFL RARLRRLQRL AFESEGAEDT RRYIEAKAQQ SQTQDEIRNI EARLVELKGA 420 WQRFDAEISS LKSSAESYEL KFREVANAPW

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MDLELEVKKE VVDEHVNTTK TTDDEEATIA QLSLLPASSK PKRKRKPKTI FSADEPMKPS  60
KKKGKIILKL KKSPPDTSVT SVPGTVEPDS RGGGKTKSSK KNKDVVDGKC SPVEPKSPAM  120
IRAEEVQSNL EPQFPSFAKS MVRSHVASCF WMGLPGYFCK SHLPDKDTSV VLEDESGIQY  180
TAKYFAEKTG LSAGWRQFST AHNLVEGDVL VFQLIAPLKL KVYIIRANDF TEGRSASNLG  240
QPAEQSENDS EEVGSEVLEG FKISTPPVQF KDVTSLDNFN ILVDGLVVDS ELPEDIRCNY  300
YKLCCSQNAF LHENLAQGIN FKLIVGTISE IVNIADALRA CKFTTSRDEF AMWDKTLKAF  360
ELLGMSVGFL RARLRRLQRL AFESEGAEDT RRYIEAKAQQ SQTQDEIRNI EARLVELKGA  420
WQRFDAEISS LKSSAESYEL KFREVANAPW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	47	PKRKRKP
2	42	65	KRKRKPKTIFSADEPMKPSKKKGK
3	42	71	KRKRKPKTIFSADEPMKPSKKKGKIILKLK
4	43	72	KRKRKPKTIFSADEPMKPSKKKGKIILKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-36	B3 family protein