PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY52308.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 647aa    MW: 73078.7 Da    PI: 7.261
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY52308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS397.31.6e-1212736441374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+ cA+av+++d ++a +lL+++++++s++gd mqR+a +f+ +L+arla+s++++y al +++ts    +++l+a++lf  ++P+ k+s++  N
  GAY52308.1 273 LRTLLTLCAQAVAANDRRNACELLKQIRQHSSSTGDGMQRMAECFADGLEARLAGSGTQIYTALITKHTS---AADVLKAYHLFLAACPFRKLSNFFSN 368
                 5789************************************************************999999...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I++ +e+++r+HiiDf+i++G+QWp+L+q L+sRp+g+p+lRiTg++ p++g   +e++eetg+rLak+Ae+++vpfefn+ +a++++++++e+L++
  GAY52308.1 369 KTIMNLAEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGAPKLRITGIDLPQPGfkPAERVEETGRRLAKYAETFKVPFEFNA-IAQKWDTIQIEDLNI 466
                 *****************************************************999***************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 ++gE+l+Vn+ ++  +llde+v ++ +r+ vL+l+++++P+v+v+   +  h+++ F +rf eal +ys+lfd+le+++pre  er+ +Ere++gre++
  GAY52308.1 467 DSGEVLVVNCLYRFRNLLDETVVVDCPRNIVLNLIRKMNPDVFVLGIVNGAHSAPFFITRFREALFFYSTLFDMLETNVPREIPERMLIEREIFGREAM 565
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nv+acegaer+er et+++W+ r ++aGF+++pl+e+++k ak  + + + + + ++e+s++l++gWk+r ++++S W+
  GAY52308.1 566 NVIACEGAERIERPETYKQWQVRNMRAGFTQLPLNEEIMKMAKERVDTNYHKDFVIDEDSQWLLQGWKGRIVYALSTWK 644
                 **************************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    
MFQESSAALQ AAEKSLYELL GEKYPPQPSY VNKNFVDHDH ESPDGTHDSS NSYCNTSTIS  60
AESDNLVDHG WNSDLSECKF SNFSSQSTPQ SSYGSSSSNS NVVDGFIDSP VSSLKIPEIF  120
RDSESALQFK RGFEEASKFL PNGNALFVDL KNNVSVVKEL KEEPKSVLVK MGKKPENENS  180
PERSRGKKNP HPEEVSLERG RSNKQSAVST ESTVSEEMFD MILLNCGQSE SVLREALQNE  240
TSKNVRQNKQ SRGSKGRKAR GRKQGGNRDV VDLRTLLTLC AQAVAANDRR NACELLKQIR  300
QHSSSTGDGM QRMAECFADG LEARLAGSGT QIYTALITKH TSAADVLKAY HLFLAACPFR  360
KLSNFFSNKT IMNLAEKATR LHIIDFGIMY GFQWPCLIQR LSSRPGGAPK LRITGIDLPQ  420
PGFKPAERVE ETGRRLAKYA ETFKVPFEFN AIAQKWDTIQ IEDLNIDSGE VLVVNCLYRF  480
RNLLDETVVV DCPRNIVLNL IRKMNPDVFV LGIVNGAHSA PFFITRFREA LFFYSTLFDM  540
LETNVPREIP ERMLIEREIF GREAMNVIAC EGAERIERPE TYKQWQVRNM RAGFTQLPLN  600
EEIMKMAKER VDTNYHKDFV IDEDSQWLLQ GWKGRIVYAL STWKPSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein