PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50946.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SRS

Protein Properties

Length: 454aa MW: 47143.6 Da PI: 8.0089

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	209.7	7.6e-65	223	385	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaeskk 98 +++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa++rrerq ++aaa++ +a +++ k++ + +++++s+t++s++++++ GAY50946.1 223 SATTCQDCGNQAKKDCSHRRCRTCCKSRGFECSTHVKSTWVPASRRRERQLMAAAAATVGPGAAgssgSTSGIKKP---RLISSQTTSHTSTSNTTPPR 318 5679*******************************************999888777665555332333334444...44577778889999999999 PP DUF702 99 eletss..........lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +++t+s lP +++++avf+cvrv++v+d ge+e+aYq++v+igGhvfkG+LydqG+++ GAY50946.1 319 SFDTTSshqdasfkesLPGQIRAPAVFKCVRVTAVEDnGEDEYAYQAVVKIGGHVFKGFLYDQGVDD 385 999998999**********************9989***********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MIVGEIVATT RRQLASDSGA FADWAASSSS SSAIRAAVPD DLSLGFNAGP ASAPTPSAGP 60 TSWPPSAAGQ HSSSRGPINY GLSPEMGMFV VAPASSFNHH HHHLHHHLHN HESSINVNSS 120 DPMAAQNAAA ATALGVGVIP LLAADQDLLN NFNSRNNNKV SQIQFWQQNQ NSHHQYFKKP 180 AAASSSSTFL EHHNNFIPSG AVTVAAASGG GNNNSNNIAG CSSATTCQDC GNQAKKDCSH 240 RRCRTCCKSR GFECSTHVKS TWVPASRRRE RQLMAAAAAT VGPGAAGSSG STSGIKKPRL 300 ISSQTTSHTS TSNTTPPRSF DTTSSHQDAS FKESLPGQIR APAVFKCVRV TAVEDNGEDE 360 YAYQAVVKIG GHVFKGFLYD QGVDDHHHQT REGFPNMAEL HLGGGASSSG PGGSGNGGKN 420 AACSSSPNIL DPSDVYAASA GGFLGGSTYG NPIN

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MIVGEIVATT RRQLASDSGA FADWAASSSS SSAIRAAVPD DLSLGFNAGP ASAPTPSAGP  60
TSWPPSAAGQ HSSSRGPINY GLSPEMGMFV VAPASSFNHH HHHLHHHLHN HESSINVNSS  120
DPMAAQNAAA ATALGVGVIP LLAADQDLLN NFNSRNNNKV SQIQFWQQNQ NSHHQYFKKP  180
AAASSSSTFL EHHNNFIPSG AVTVAAASGG GNNNSNNIAG CSSATTCQDC GNQAKKDCSH  240
RRCRTCCKSR GFECSTHVKS TWVPASRRRE RQLMAAAAAT VGPGAAGSSG STSGIKKPRL  300
ISSQTTSHTS TSNTTPPRSF DTTSSHQDAS FKESLPGQIR APAVFKCVRV TAVEDNGEDE  360
YAYQAVVKIG GHVFKGFLYD QGVDDHHHQT REGFPNMAEL HLGGGASSSG PGGSGNGGKN  420
AACSSSPNIL DPSDVYAASA GGFLGGSTYG NPIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	1e-64	SRS family protein