PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY50782.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 280aa MW: 31915.2 Da PI: 9.4743 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99 | 1.9e-31 | 38 | 87 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ GAY50782.1 38 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 87 79***********************************************8 PP | |||||||
2 | K-box | 102.3 | 6.2e-34 | 108 | 202 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s +ea+++ +qqe++kL+++i+++q+ +Rh+lGe L++L++keL++Le +Lek++ ++RskKne+ll++ie + k+e +lq++n++Lr+++ e GAY50782.1 108 PGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 202 334899************************************************************************************99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence |
MVEGCSSSKL PATMEFPKQN PESSSQSKKI GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK 60 AYELSVLCDA EVALIVFSSR GRLYEYANNS VRATIDRYKK ACADSSNPGS ITEANTQFYQ 120 QEATKLRRQI REIQNLNRHI LGEALSTLNF KELKNLEARL EKGIGRVRSK KNEMLLAEIE 180 FMEKREIQLQ NDNMYLRARI SENERAQQER QSESMMQQGG GHVYEPAASQ PYDRNFLPVN 240 LLEPNHQYAR QDDQPPLQLV IAASTSEICK SLSATLHLSA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-114 | MIKC_MADS family protein |