PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50530.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRAS

Protein Properties

Length: 411aa MW: 44934.4 Da PI: 9.6189

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	69.4	6.9e-22	231	357	111	238
GRAS 111 rvHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203 H++Df++++GlQW a + sR+++++++ ++ ++ + + rLa++A++++++f f+ ++a+rled+++++L+v+p+Eala GAY50530.1 231 LRHVVDFNLMHGLQWRVDTGAGSsSRRASAAEV-------DRHWparrqTARLAPRNRLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALA 322 45***********865555443444444443.......22223333244444567789*********************************** PP GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkv 238 V+++lqlh+ll ++ + +s+ + vL +++l+Pk+ GAY50530.1 323 VKSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKI 357 *******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MVLYDSATSG GSNSGSSSSC SGTKQPVAEI DGLLAGAGYK VRSSELRQVA QRLERLETVM 60 VNSPADISQL ASDTVHYNPS DLASWVDSLL SEFNQPPLPL PSDLPDLPDI IAGPSVNHTA 120 VGNYLTDNFT TTQQQQQQQQ QMMIVTAMEE DSGIRLVHML MTCAESVQRG EMAVAGSLIE 180 DMKGLLTRVN PSCGIGKVAG CFIDALSFRI MGVGGSICGS GHFRSFRRPR LRHVVDFNLM 240 HGLQWRVDTG AGSSSRRASA AEVDRHWPAR RQTARLAPRN RLRLAELARS VNIRFTFRGV 300 AASRLEDVKP WMLQVSPKEA LAVKSILQLH KLLGSDPARN SPMEMVLGWI RNLNPKIHDG 360 CRAIIESQPA TSSWTGSRRL CHIIQPCLTR SRLSASAGKG LSRDLLTRRD L

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MVLYDSATSG GSNSGSSSSC SGTKQPVAEI DGLLAGAGYK VRSSELRQVA QRLERLETVM  60
VNSPADISQL ASDTVHYNPS DLASWVDSLL SEFNQPPLPL PSDLPDLPDI IAGPSVNHTA  120
VGNYLTDNFT TTQQQQQQQQ QMMIVTAMEE DSGIRLVHML MTCAESVQRG EMAVAGSLIE  180
DMKGLLTRVN PSCGIGKVAG CFIDALSFRI MGVGGSICGS GHFRSFRRPR LRHVVDFNLM  240
HGLQWRVDTG AGSSSRRASA AEVDRHWPAR RQTARLAPRN RLRLAELARS VNIRFTFRGV  300
AASRLEDVKP WMLQVSPKEA LAVKSILQLH KLLGSDPARN SPMEMVLGWI RNLNPKIHDG  360
CRAIIESQPA TSSWTGSRRL CHIIQPCLTR SRLSASAGKG LSRDLLTRRD L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	2e-35	GRAS family protein