PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY50335.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 359aa    MW: 41166.2 Da    PI: 5.6774
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY50335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-0690113226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k  lC f+ + G+C+ G +CkF+H+
  GAY50335.1  90 KSILCEFYKA-GQCQKGFKCKFSHD 113
                 6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MPPKQQSKAE LAKKQKIVED KTFGLKNKNK SKNVQKYVQN LKQNVQPKPD QSKVAAKKKK  60
EEEKAKEKEL NDLFKIAVSQ PKVPVGVDPK SILCEFYKAG QCQKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DKETMEDWDQ ETLEKVVESK NKEYQQNKPT DIVCKYFLEA VEKKQYGWFW  180
VCPNGGKDCH YRHALPPGYV LKSQMKALLE EEAEKITIEE EIENQRAKIT TTTPMTPELF  240
TEWKKKKIAE RDAGLAAERA ERAKNDRMSG RELFLSDSSW FVDDAEAYDK YQREEESHVT  300
EQKANGNSAR DGPSNSAKAG QEDEVVPDDD DELDMDELNE LEASLAKTSI QIQDPSNGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-153C3H family protein