PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50325.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 484aa MW: 53982.2 Da PI: 6.8633

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.6	2.7e-17	149	198	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g GAY50325.1 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 198 78*****************......55**********************997 PP
2	AP2	41.3	3.7e-13	242	292	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + rk+++lg + ++eeAa+a+++a +k g GAY50325.1 242 SKYRGVTLHK-CGRWEARMGQY--L-GRKYVYLGLYNSEEEAARAYDRAVLKCIG 292 89******.7**5552..2.26*******************998665 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MLDLNLSVYS GEYSNSTNRE SSGSFHSSVV TSVGDCCSPA SSSGGYIFSI LKDSNNNSGS 60 NQNDHHHHQH HYQNDNVLTQ GGGGGSSGIP FIPLIINTEV EEEEEGNNNN DDERDRVASL 120 SQQQEVQIQQ HSHSRQMKKT RRGPRSKSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 180 TALAAARAYD RAAIKFRGVD ADINFHVDDY QDDIRIMSNF TKDEFVYSLR RQNTAAASRG 240 TSKYRGVTLH KCGRWEARMG QYLGRKYVYL GLYNSEEEAA RAYDRAVLKC IGREAVTNFD 300 PNSYDENSIY GTNPAEGDNE VDLNLGIAPP KSNDGRKDEN NWSKFLFQNG WNNMPNDFGA 360 RKTQLENSVA ATARVQPAPC NPAMPIEPSP PGWSGGFSNH LLNERALEKG NINSFPSWTW 420 QFEAPLVGSA AVPRFSTAAS SGFPSMITAP SVVSNHLHYP NTMVHDRYTQ SIINPNMPHF 480 CCRS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MLDLNLSVYS GEYSNSTNRE SSGSFHSSVV TSVGDCCSPA SSSGGYIFSI LKDSNNNSGS  60
NQNDHHHHQH HYQNDNVLTQ GGGGGSSGIP FIPLIINTEV EEEEEGNNNN DDERDRVASL  120
SQQQEVQIQQ HSHSRQMKKT RRGPRSKSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  180
TALAAARAYD RAAIKFRGVD ADINFHVDDY QDDIRIMSNF TKDEFVYSLR RQNTAAASRG  240
TSKYRGVTLH KCGRWEARMG QYLGRKYVYL GLYNSEEEAA RAYDRAVLKC IGREAVTNFD  300
PNSYDENSIY GTNPAEGDNE VDLNLGIAPP KSNDGRKDEN NWSKFLFQNG WNNMPNDFGA  360
RKTQLENSVA ATARVQPAPC NPAMPIEPSP PGWSGGFSNH LLNERALEKG NINSFPSWTW  420
QFEAPLVGSA AVPRFSTAAS SGFPSMITAP SVVSNHLHYP NTMVHDRYTQ SIINPNMPHF  480
CCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	2e-81	AP2 family protein