PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50055.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 617aa MW: 69761.9 Da PI: 8.5001

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.6	7.5e-17	143	217	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GFs+ + ++ k +g i++ +f Cs+e +++++ ++ C+a l++++++++kw vtk++++HnH+++ GAY50055.1 143 FYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVES--------------CNAVLRIERKDSEKWTVTKFVEDHNHSMV 217 9*************************************999877..............************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
EKKIGTRKRV EVDILSEFEG PTQFTKAEAV QQQIPVGPKL KRKKRKKEKK TLITHTHNPQ 60 EHNHWTQFTF QGFHLAIPLV EGVEVDGDKG DDPVATNAEF DKSKKQNVTE NSSEIEVTNH 120 DNGESSKPYV GMEFDSEDAA KTFYDAYARR MGFSTHVGPF TRAKPDGPII TWDFACSREV 180 FKRKNVESCN AVLRIERKDS EKWTVTKFVE DHNHSMVTPN KVQYLRPRRH FAGATKNVAE 240 ALDVSGDVYI TTDGNHLSYE PNSIRNSLPV DPSQFESSWC SLLDKYDLQK NEWLHAVYNA 300 RRQWAPVYFR GTFFAALSSN QGISSFFDGY VHQQTTIPLF FKQYERALEN SREKEIELDY 360 DTICTTPVLK TPSPMEQQAA NLYTKKVFAK FQEELVGALA VETYNVAISA LKEAGKKVLA 420 VKKNVAKISP PSSQVVLYSQ EDSNKKTPPS VPEMIPSLWP WQEAMPHRFN LNDSGVSVSD 480 LNQPSMVPVS FHRDCGTPDS TVVLTCFKSM TWVIENKNST SASKVAVINL KLQDYGKKPS 540 GETEVQFRLT KTTLEPMLRS MAYISQQLSA PANKVAVINL KLQDTKTTSG EAEVKFQVSR 600 DTLGSMLRSL AYIREQL

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

EKKIGTRKRV EVDILSEFEG PTQFTKAEAV QQQIPVGPKL KRKKRKKEKK TLITHTHNPQ  60
EHNHWTQFTF QGFHLAIPLV EGVEVDGDKG DDPVATNAEF DKSKKQNVTE NSSEIEVTNH  120
DNGESSKPYV GMEFDSEDAA KTFYDAYARR MGFSTHVGPF TRAKPDGPII TWDFACSREV  180
FKRKNVESCN AVLRIERKDS EKWTVTKFVE DHNHSMVTPN KVQYLRPRRH FAGATKNVAE  240
ALDVSGDVYI TTDGNHLSYE PNSIRNSLPV DPSQFESSWC SLLDKYDLQK NEWLHAVYNA  300
RRQWAPVYFR GTFFAALSSN QGISSFFDGY VHQQTTIPLF FKQYERALEN SREKEIELDY  360
DTICTTPVLK TPSPMEQQAA NLYTKKVFAK FQEELVGALA VETYNVAISA LKEAGKKVLA  420
VKKNVAKISP PSSQVVLYSQ EDSNKKTPPS VPEMIPSLWP WQEAMPHRFN LNDSGVSVSD  480
LNQPSMVPVS FHRDCGTPDS TVVLTCFKSM TWVIENKNST SASKVAVINL KLQDYGKKPS  540
GETEVQFRLT KTTLEPMLRS MAYISQQLSA PANKVAVINL KLQDTKTTSG EAEVKFQVSR  600
DTLGSMLRSL AYIREQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	46	PKLKRKKRK
2	41	47	KRKKRKK
3	42	48	RKKRKKE
4	42	49	RKKRKKEK
5	42	50	RKKRKKEKK
6	43	47	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	3e-73	FAR1 family protein