PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY49951.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 335aa    MW: 35714.5 Da    PI: 9.9576
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY49951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-07142167227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 k +lC+ +     Ck+Gd+C+FaHg+
  GAY49951.1 142 KSRLCNKYNSAEGCKFGDKCHFAHGE 167
                 6799******99************96 PP
2zf-CCCH36.86.7e-12302326126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC +fa+ G C +GdrC+FaHg
  GAY49951.1 302 FKTKLCENFAK-GSCTFGDRCHFAHG 326
                 69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MELGGGRKRG RHDGASNGNG GFKKSKQEME NFPTGIGSKS KPCTKFFRSG PINWHLKFRN  60
MLSKLFSTGV TLLNECSFCT RAGTSGCPFG EGCHFLHYVP GGFKAVSQML NLGGTPAHPP  120
PPPRNSGAPP SFPDGSSPPA VKSRLCNKYN SAEGCKFGDK CHFAHGEWEL GRPTVPSYED  180
PRAMGGPMHG RMGGRLEPPP QSLGAAASFG ASATAKISID AKLAGAIIGK NGVNSKQICR  240
LTGAKLSIRD HEVDPNLRNI ELEGTFDQIK QASAMVRELI VNVGSGSGHS MKSNSSSQSN  300
NFKTKLCENF AKGSCTFGDR CHFAHGSEEL RKSVI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-47C3H family protein